PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02613.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 388aa    MW: 42234.8 Da    PI: 7.4859
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02613.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.82.1e-40163241178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
  Pahal.G02613.1 163 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 241
                     6******************************98725689*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.3E-34158226IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.291161239IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.1E-37162242IPR004333Transcription factor, SBP-box
PfamPF031107.6E-31164238IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MMNLSAAANA CDEFPYVASN PAPPSLLPIM EQESSIQREQ LGYNLEASSL ALLPPSNAAA  60
AAAGGHHHAT IAGHSPHDIL QFYPSSHYLA ASGNPYSHFS GGTFQSYYPQ AAQAAPEYYF  120
PTLVSSAEEN MASFAATQLG LNLGYRTYFP PRGGYTYGHH PPRCQAEGCK ADLSSAKRYH  180
RRHKVCEHHS KAPVVVTAGG LHQRFCQQCS RFHLLDEFDD AKKSCRKRLA DHNRRRRKSK  240
PSDADAGDKK RAHWNKAAAA KDKAGSSSKN MDIGDGLGTQ ILGSALLSED QDQAMDLGEV  300
VKEAVDPKGK ASMPQHHGIH HQQNHHGFPF HSSSAGSCFP QTQAMSGDTT SNIAQVQEPS  360
LAFHHQHHQH SNILQLGQAM FDLDFEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-271642381184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233250RRRRKSKPSDADAGDKKR
2234239RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the formation of ligules and auricles during leaf organogenesis.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU894960.0U89496.1 Zea mays liguleless1 protein (liguleless1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824698.10.0protein LIGULELESS 1-like
SwissprotO040030.0LG1_MAIZE; Protein LIGULELESS 1
TrEMBLA0A2S3IB490.0A0A2S3IB49_9POAL; Uncharacterized protein
STRINGSi022315m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-42squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Sylvester AW,Cande WZ,Freeling M
    Division and differentiation during normal and liguleless-1 maize leaf development.
    Development, 1990. 110(3): p. 985-1000
    [PMID:2088734]