PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02662.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 559aa    MW: 59444.3 Da    PI: 4.7452
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02662.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-30310369159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Pahal.G02662.1 310 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 369
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-31295371IPR003657WRKY domain
SuperFamilySSF1182902.88E-27303371IPR003657WRKY domain
PROSITE profilePS5081128.529305371IPR003657WRKY domain
SMARTSM007741.4E-37310370IPR003657WRKY domain
PfamPF031061.0E-26311369IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MSSKKKRAAI DLSLEAERRE EDDRSGGDRR DKDARVDKEE EQFKEQKEAP NKEETGGEEK  60
VVEVVVDQGG DGTKEEIKNR TQQGEEMEED KQSEEDGSGD DESDGAGTRA DDDKLVAVED  120
SGDGDGDHTT MVQDEVSAMQ EEMEKMKEEN RMLRRVVDRT VRDYYELQMK LAAYQQQPAD  180
EPKEPEVFLT LGATAGFPEP KRKEQAARRP SVGSDDTDDG KEDLGLSLSL RASSSYEEEK  240
LQEAARDFEG GASVAGADGK AKGYALLESS KLGAPAAGDL AAAGITSQSV NPANRKTRVS  300
VRVRCQGPTM NDGCQWRKYG QKVAKGNPCP RAYYRCTVAP GCPVRKQVQR CLEDMSILVT  360
TYEGTHNHPL PVGATAMAST TSAAATFMLL SSTSSSSSIS EAGGGSAAPP YLSPYLLNST  420
SHHSSASPLL TTPSSVPSVP GAASGMNLFG HSPMLAQHHA PHLKYPWSSS DSSHGSGGGG  480
LAGSKRPFWS TGGDDKAATL PDNVSAVMSD PSKFSVAIAA AINSFMGKDG QVMSSKDGES  540
SSSKSSNKWG VVESLPPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-213103711777Probable WRKY transcription factor 4
2ayd_A2e-21297373176WRKY transcription factor 1
2lex_A3e-213103711777Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3632471e-104AK363247.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013L09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827272.10.0probable WRKY transcription factor 9
TrEMBLA0A2S3GTK90.0A0A2S3GTK9_9POAL; Uncharacterized protein
STRINGSi016791m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-49WRKY DNA-binding protein 9