PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02710.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 948aa    MW: 104531 Da    PI: 6.0867
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02710.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.16e-22143243199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++i  ++++r++lt+GW+ Fv a++Lk+gD+v+F   ++++
  Pahal.G02710.2 143 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNLWTFRHI-YRQPKRHLLTTGWSLFVGAKRLKAGDSVLFI--RDEK 233
                     89*********************999*****9555555.49***************7.5667799************************..4577 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+v+v+r+
  Pahal.G02710.2 234 SQLLVGVRRA 243
                     778*****97 PP
2Auxin_resp113.81.6e-37268350183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaas++  F+++YnPr+s+s Fv+++ +++ka++++ svGmRf m+fete+ss+rr++Gt+vg+sd+dp+rWpnSkWr+L+
  Pahal.G02710.2 268 AAHAASSGGSFTIYYNPRTSPSPFVIPLTRYNKATYMQPSVGMRFAMMFETEESSKRRCTGTIVGISDYDPMRWPNSKWRNLQ 350
                     79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.66E-42133271IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-38136256IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-19142242No hitNo description
PfamPF023621.7E-19143243IPR003340B3 DNA binding domain
SMARTSM010191.4E-20143244IPR003340B3 DNA binding domain
PROSITE profilePS5086312.76143244IPR003340B3 DNA binding domain
PfamPF065073.9E-33268350IPR010525Auxin response factor
PROSITE profilePS5174524.028844928IPR000270PB1 domain
PfamPF023092.7E-9845931IPR033389AUX/IAA domain
SuperFamilySSF542773.01E-8860923No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 948 aa     Download sequence    Send to blast
MASSQEKATS GVLRNAAALL DEMQLMGEAQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY  60
FPQGHSEQVA ATTKKVPNSR IPNYPSLPSQ LLCQVHNITL HADKETDEIY AQMTLQPVHS  120
ETDVFPIPTL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN  180
QELIVRDLHD NLWTFRHIYR QPKRHLLTTG WSLFVGAKRL KAGDSVLFIR DEKSQLLVGV  240
RRATRQQPPL SSSVLSTDSM HIGVLAAAAH AASSGGSFTI YYNPRTSPSP FVIPLTRYNK  300
ATYMQPSVGM RFAMMFETEE SSKRRCTGTI VGISDYDPMR WPNSKWRNLQ VEWDEHGYGE  360
RSERVSLWDI ETPENSLVFS SPLNSKRQCL PSYGVPGLQI GSVNMSSIPR AQANPFGNLQ  420
HMPGIGSELA LMLLNQSGQN LGSPLACQQS SFSSIIQNVK HGYIPPSTFG SSTGSVKQEN  480
MLSNEAQQQL NAPNIEKDDQ VSCEVQPSID SISVQELNVK ARGPRNTDSY SSQSISDQNS  540
KGEPRTKTRR SKKGLSHKSI SDKSELSSVP SQIYDNKRHG SEPKLVDCEA EQVNCGDNED  600
SSGALTRGGF AGEPQVQQVE QHELLSPPKL ESSKSPDGGK SVSSFPNQGC SPQFFEGLDW  660
VIQPSYYQDS NGIHSVSGSE NILNQSTDIT SAINADTMEA FQTSCLSECF PNSVQEFISS  720
PDLNSLTFMS HDMQHFEGQH EVNNLPSTSN SYVQMSYSEE SGNQSASLSG LHMEAIHINS  780
SCSEPVATGS FDTGMFSKLP DLRESQVLPL QEIHNSSMGT PSCSMDAAEY SIDRSAKPMR  840
PPVRTYTKVQ KLGSVGRSID VTRYRDYHEL RSAIACMFGL QGKLEHPGSS DWKLVYVDYE  900
NDVLLVGDDP WEEFINCVRC IRILSPSEVQ QMSENGVHVL NDCIQIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.01737331390Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824429.10.0auxin response factor 11
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLA0A2S3IBA80.0A0A2S3IBA8_9POAL; Auxin response factor
STRINGPavir.Ga00157.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]