PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02774.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 789aa    MW: 87912.6 Da    PI: 6.5107
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02774.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.3e-23132233199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  Pahal.G02774.2 132 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 222
                     99***********************9*****86555544..8************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  Pahal.G02774.2 223 KNQLLLGIRRA 233
                     9999****997 PP
2Auxin_resp112.73.5e-37258341183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k
  Pahal.G02774.2 258 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 341
                     79*******************************986599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.36E-48117261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-41124247IPR015300DNA-binding pseudobarrel domain
CDDcd100173.76E-21131232No hitNo description
PROSITE profilePS5086312.308132234IPR003340B3 DNA binding domain
SMARTSM010198.1E-24132234IPR003340B3 DNA binding domain
PfamPF023624.9E-21132233IPR003340B3 DNA binding domain
PfamPF065071.5E-32258341IPR010525Auxin response factor
PfamPF023091.9E-7683773IPR033389AUX/IAA domain
SuperFamilySSF542771.24E-7683764No hitNo description
PROSITE profilePS5174524.037689773IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MSSSSAASIG QPPPAAPPEE EKKCLNSELW HACAGPLVCL PTVGTRVVYF PQGHSEQVAA  60
STNKEVDGHI PNYPNLPPQL ICQLHDVTMH ADVETDEVYA QMTLQPLNPQ EQNDAYLPAE  120
MGIMSKQPTN YFCKTLTASD TSTHGGFSVP RRAAERVFPP LDFTQQPPAQ ELIARDIHDV  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRASRPQTVM  240
PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLSKYIK AVFHTRISVG  300
MRFRMLFETE ESSVRRYMGT ITEVSDADPV RWPSSYWRSV KVGWDESTAG ERPPRVSLWE  360
IEPLTTFPMY PSLFPLRVKH PWYSGVAALH GSWGQQRLHP SLLSNDHDQY QAVVAAAAAS  420
QSGGYLKQQF LHLQQPMQYP QEQCNLNPLL QQQIMQQASQ QQLVSPDSQN IQSVLSPSAI  480
QQQLHQLQQM QHAHNDQKQK IQSDQPYQVP SSAVLPSPTS LPSHLREKFG FSDPNVNSSS  540
YISSSSNENM LESNFLQGSS KCVDLSRFNQ PVVSEQQQQQ QQQAWKQKFM GSQSMSFGGS  600
GSLNSPTSKD GSVDSKVGRD VQNQSLFTTQ VDNSSLLYNM VPNLTSNVAD NNISAIPSGS  660
TYLQSPMYGC LDDSSGLLQN TGENDPTTRT FVKVYKSGSV GRSLDITRFS NYAELREELG  720
QMFGIKGQLD DPDRSGWQLV FVDRENDVLL LGDDPWESFV NSVWYIKILS PEDVHKMGKQ  780
GNDPRYLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1612136247388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0698220.0BT069822.1 Zea mays full-length cDNA clone ZM_BFb0290E10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823846.10.0auxin response factor 12
SwissprotQ0J9510.0ARFL_ORYSJ; Auxin response factor 12
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLA0A2S3IBG60.0A0A2S3IBG6_9POAL; Auxin response factor
STRINGPavir.Ga00205.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi Y, et al.
    OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa).
    New Phytol., 2012. 193(1): p. 109-20
    [PMID:21973088]
  3. Shen WJ,Ruan XL,Li XS,Zhao Q,Li HP
    RNA silencing suppressor Pns11 of rice gall dwarf virus induces virus-like symptoms in transgenic rice.
    Arch. Virol., 2012. 157(8): p. 1531-9
    [PMID:22592958]
  4. Wang S, et al.
    Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa).
    New Phytol., 2014. 201(1): p. 91-103
    [PMID:24111723]
  5. Fan J, et al.
    Infection of Ustilaginoidea virens intercepts rice seed formation but activates grain-filling-related genes.
    J Integr Plant Biol, 2015. 57(6): p. 577-90
    [PMID:25319482]