PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G02832.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 229aa MW: 23978.3 Da PI: 7.0969

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G02832.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.3	5.2e-36	65	123	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++l+cprC+stntkfCyynnys++qPr+fC+aCrryWt+GG+lr+vPvGg++r+ k Pahal.G02832.1 65 QQQQLECPRCQSTNTKFCYYNNYSTAQPRHFCRACRRYWTHGGTLRDVPVGGASRRGAK 123 6899*************************************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.0E-32	67	122	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-21	69	113	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.857	69	123	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	71	107	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MAPAAGASTL SATSAGAADA SKRPAASDAE PIGSPVLHHQ ASHGATEDGD EAARKAGLGQ 60 QHPRQQQQLE CPRCQSTNTK FCYYNNYSTA QPRHFCRACR RYWTHGGTLR DVPVGGASRR 120 GAKRRRVSAE PSPSSASSPP QTTARAEDAY RMIPDLSAFP FLSDGSFLPQ LDLGAAPAAT 180 FSSWQQSVVS DFYDGFAPWD DGTAGAAGVT GAWGDIAGLE LSWPPPGN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	126	KRRRV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00593	DAP	Transfer from AT5G66940	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824347.1	1e-166	dof zinc finger protein DOF1.6-like
TrEMBL	A0A2S3IBM5	1e-164	A0A2S3IBM5_9POAL; Uncharacterized protein
STRING	Pavir.Gb00048.1.p	1e-113	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14047	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	5e-26	Dof family protein

Link Out ? help Back to Top
Phytozome	Pahal.G02832.1