PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02946.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 508aa    MW: 54905.3 Da    PI: 6.3936
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02946.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.33.5e-24109210199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +a+++       + ++ +   l+++d++g+ W++++iyr++++r++lt+GW++Fv+a+ L +gD+ vF+  +r 
  Pahal.G02946.1 109 FAKQLTQSDANNGGGFSVPRYCADHIfpmldfdDDPPVQ--NLVMRDPQGNPWQFRHIYRGTPRRHLLTTGWSKFVNAKLLVAGDTAVFM--RRP 199
                     89******************999777*****97656656..6************************************************..679 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+++++r+
  Pahal.G02946.1 200 DGDLLIGLRRA 210
                     9999***9997 PP
2Auxin_resp57.84.6e-20242311168
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkma.fetedsserrl.sGtvvgvsd 68 
                     aa+ a+++s+F+v+Y Pr++++eFvv++++ve+al +++ +G++++m+ +e ed++++++  Gtv +++ 
  Pahal.G02946.1 242 AARLAAEGSPFTVTYFPRQGAAEFVVPRKEVEDALASRWEPGTQVRMQvMEAEDARRTEWaNGTVKALHP 311
                     688999*****************************************858***************98774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.98E-28104212IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-33105212IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-19108209No hitNo description
PROSITE profilePS5086312.816109211IPR003340B3 DNA binding domain
SMARTSM010199.2E-16109211IPR003340B3 DNA binding domain
PfamPF023624.5E-21109210IPR003340B3 DNA binding domain
PfamPF065075.1E-15242311IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MALPPPAVPH PIVDRDVWLA CAVPLSRLPV VGAQVYYFPH GHAEQCPEHL PAPLPTPHLF  60
PCVVTAINLG ADDNTNEVFA QISLQPGPHR GPPAPDADPS NNPHHLSYFA KQLTQSDANN  120
GGGFSVPRYC ADHIFPMLDF DDDPPVQNLV MRDPQGNPWQ FRHIYRGTPR RHLLTTGWSK  180
FVNAKLLVAG DTAVFMRRPD GDLLIGLRRA PRYPVVSRDD AARQPPPRNA RARVPPGDVM  240
EAARLAAEGS PFTVTYFPRQ GAAEFVVPRK EVEDALASRW EPGTQVRMQV MEAEDARRTE  300
WANGTVKALH PNIWRALEVD WDDSSPFSKT RSKYVNAWQV QFVSFPPLLK RLKISDTIAP  360
LCSGDCSSLA PPLIGPESKA MAILLGSPIP AGMQGARHSG PSDVPSSSST LGMLTTQLFF  420
PLPSGDLQMP PSVISGGSSE IFDPEVGSPP NNSVNMPPPE LPVEAKSIQL FGATITQHVA  480
QIATKGASEE VNGAVNGVVD GNVGKDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-601134149388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0673271e-174BT067327.1 Zea mays full-length cDNA clone ZM_BFc0012D17 mRNA, complete cds.
GenBankHM0045201e-174HM004520.1 Zea mays auxin response factor 5 (ARF5) gene, complete cds.
GenBankJX4285171e-174JX428517.1 Zea mays subsp. mays clone pUT3116 ARF5 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825005.10.0auxin response factor 13-like
SwissprotQ7XSS91e-154ARFM_ORYSJ; Auxin response factor 13
TrEMBLA0A2S3ICL10.0A0A2S3ICL1_9POAL; Auxin response factor
STRINGPavir.J03524.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-90auxin response factor 17
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]