PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H00105.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 736aa MW: 81097.7 Da PI: 4.8179

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H00105.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	332.9	6e-102	355	726	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +lL++cA+av++++ + a++lL ++++++sp+gd++qRla++f+e+L+arla+s+s++y++l +++ s ++e l+a++l+ +s + +++ Pahal.H00105.2 355 STLLIHCAQAVATDNCRSATELLRQIKQHSSPRGDATQRLAHCFAEGLEARLAGSGSQVYRSLMAERIS---VVEYLKAYQLYLAASCFKMMAFK 446 579**********************************************************999998...******************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 N +I + ++g ++vHi+D++i++G+QWp+Ll +a+ ++gpp++RiTg++ p++g + ++eetg+rL++ A++lgvpf+f+ ++ r+e++ Pahal.H00105.2 447 FSNMTIFKVIAGRKKVHIVDYGIQYGFQWPSLLGYMATLKGGPPQVRITGIDLPQPGfrPASRIEETGRRLSNCASQLGVPFKFHS-ITARWETI 540 *****************************************************99*************************.699* PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 + ++L+++p+E+l+Vn++ + +l+de v+++s +rd vL+ + +++P+ +++ +a+++++ F++rf eal ++sa+fd+l+a++pre+++r Pahal.H00105.2 541 SADDLNIDPDEVLIVNSIRNFGNLMDEGVDIDSpsPRDVVLSNICKMKPDAFILFVMNASYSAPFFVTRFREALFFHSAMFDMLDATAPRENHQR 635 *************************9999889******************************************************* PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 vEr l+++ + nvvaceg++r+er et+++W+ r ++aG++++pl+ +++k ++ +r+ + + + ++ ++++l+ gWk+r L+++S W Pahal.H00105.2 636 FLVERGLFRKCALNVVACEGSDRVERPETYKQWQVRNRRAGLRQLPLDPDVVKAVREKVREQYHKDFVIDVDHQWLLEGWKGRILYAMSTW 726 ***********************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.628	328	707	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-99	355	726	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence Send to blast
MAATPEGLFA DPEPFSPSIF LDLPPTPRPD GIGEGPASSD DLVLPFISRM LMEEDMDDNF 60 LYQFTDHPAL LQAQEPYARI LSDANSTASG SAATLSPSSD YDPVQLLLSP LCPDMGLHDF 120 NNGDVGAFFL PAQDGASPEL EQNPAQSGNA GDANAFVGYG GSTGVQSSAF LDAADEQSPA 180 QLGTTTLPLP AGDGDHAVLA LAFFSGQNGG NMDMLNTAFL KGMEEANKFL PTNNSLLIDL 240 EDTSGQHLPR DSNLSRAFAT IQEEEGRGNG RGRKNRLNWD DLEAETCRKS KLMVPEPEET 300 GEKVDEMIVN GRELCLKEME ALRITMGSDA KKNTRKGKGK SAKGMWSADE AVDLSTLLIH 360 CAQAVATDNC RSATELLRQI KQHSSPRGDA TQRLAHCFAE GLEARLAGSG SQVYRSLMAE 420 RISVVEYLKA YQLYLAASCF KMMAFKFSNM TIFKVIAGRK KVHIVDYGIQ YGFQWPSLLG 480 YMATLKGGPP QVRITGIDLP QPGFRPASRI EETGRRLSNC ASQLGVPFKF HSITARWETI 540 SADDLNIDPD EVLIVNSIRN FGNLMDEGVD IDSPSPRDVV LSNICKMKPD AFILFVMNAS 600 YSAPFFVTRF REALFFHSAM FDMLDATAPR ENHQRFLVER GLFRKCALNV VACEGSDRVE 660 RPETYKQWQV RNRRAGLRQL PLDPDVVKAV REKVREQYHK DFVIDVDHQW LLEGWKGRIL 720 YAMSTWVADD AISEL*

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence Send to blast

MAATPEGLFA DPEPFSPSIF LDLPPTPRPD GIGEGPASSD DLVLPFISRM LMEEDMDDNF  60
LYQFTDHPAL LQAQEPYARI LSDANSTASG SAATLSPSSD YDPVQLLLSP LCPDMGLHDF  120
NNGDVGAFFL PAQDGASPEL EQNPAQSGNA GDANAFVGYG GSTGVQSSAF LDAADEQSPA  180
QLGTTTLPLP AGDGDHAVLA LAFFSGQNGG NMDMLNTAFL KGMEEANKFL PTNNSLLIDL  240
EDTSGQHLPR DSNLSRAFAT IQEEEGRGNG RGRKNRLNWD DLEAETCRKS KLMVPEPEET  300
GEKVDEMIVN GRELCLKEME ALRITMGSDA KKNTRKGKGK SAKGMWSADE AVDLSTLLIH  360
CAQAVATDNC RSATELLRQI KQHSSPRGDA TQRLAHCFAE GLEARLAGSG SQVYRSLMAE  420
RISVVEYLKA YQLYLAASCF KMMAFKFSNM TIFKVIAGRK KVHIVDYGIQ YGFQWPSLLG  480
YMATLKGGPP QVRITGIDLP QPGFRPASRI EETGRRLSNC ASQLGVPFKF HSITARWETI  540
SADDLNIDPD EVLIVNSIRN FGNLMDEGVD IDSPSPRDVV LSNICKMKPD AFILFVMNAS  600
YSAPFFVTRF REALFFHSAM FDMLDATAPR ENHQRFLVER GLFRKCALNV VACEGSDRVE  660
RPETYKQWQV RNRRAGLRQL PLDPDVVKAV REKVREQYHK DFVIDVDHQW LLEGWKGRIL  720
YAMSTWVADD AISEL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-39	360	727	25	379	Protein SCARECROW
5b3h_A	4e-39	360	727	24	378	Protein SCARECROW
5b3h_D	4e-39	360	727	24	378	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826966.1	0.0	scarecrow-like protein 30
TrEMBL	A0A2S3IFW6	0.0	A0A2S3IFW6_9POAL; Uncharacterized protein
STRING	Pavir.Hb00043.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-149	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pahal.H00105.2