PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00121.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 154aa    MW: 16317.4 Da    PI: 10.5656
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00121.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000294365123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C  Cg+sF +   L  H  +H
  Pahal.H00121.1 43 FRCRTCGRSFATFQALGGHRTSH 65
                    89**********99998888777 PP
2zf-C2H218.45.9e-0692114123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cg++F++   L  H+r+H
  Pahal.H00121.1  92 HRCNTCGMVFTTGQALGGHMRRH 114
                     79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.0E-94266IPR007087Zinc finger, C2H2
SuperFamilySSF576672.9E-843114No hitNo description
PROSITE profilePS5015711.0944370IPR007087Zinc finger, C2H2
SMARTSM003550.184365IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
PfamPF139122.2E-1191116IPR007087Zinc finger, C2H2
PROSITE profilePS501579.72392114IPR007087Zinc finger, C2H2
SMARTSM003550.008592114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MATTARSSTA DLLLYLSLST ASKVIAKAGG GRHHRDRAAD GAFRCRTCGR SFATFQALGG  60
HRTSHNRPRV RADGLDLLLG ARPGKGAASD VHRCNTCGMV FTTGQALGGH MRRHRAAVFD  120
AVVAAVPETT TTTSFRDSDD DEGHLPIQLI QFI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828381.11e-107zinc finger protein ZAT11-like
TrEMBLA0A2S3IFT91e-105A0A2S3IFT9_9POAL; Uncharacterized protein
STRINGPavir.Ha00194.1.p3e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.18e-23C2H2 family protein