PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00125.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 163aa    MW: 16739.8 Da    PI: 9.879
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00125.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000325072123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C  Cg+sF +   L  H  +H
  Pahal.H00125.1 50 FRCRTCGRSFATFQALGGHRTSH 72
                    89**********99998888777 PP
2zf-C2H216.13.2e-0593115123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cg++F++   L  H+r+H
  Pahal.H00125.1  93 HRCNACGMVFPTGQALGGHMRRH 115
                     79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-94973IPR007087Zinc finger, C2H2
SMARTSM003550.185072IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.03E-950115No hitNo description
PROSITE profilePS5015711.0945077IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
PfamPF139127.3E-1192117IPR007087Zinc finger, C2H2
PROSITE profilePS501579.55693120IPR007087Zinc finger, C2H2
SMARTSM003550.01193115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGDVATARNA PAASTANSLL LLLSLSLSPA SKVIAKQGGG RRLGGDDSAF RCRTCGRSFA  60
TFQALGGHRT SHNRPRVLGA RPGKGGGTAT DAHRCNACGM VFPTGQALGG HMRRHRAAAA  120
ALDVAAPLEA PPPKTVSGLS EEESDDENYY TGHLSSTLIQ FI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827389.11e-114zinc finger protein ZAT7-like
TrEMBLA0A2S3IFU11e-113A0A2S3IFU1_9POAL; Uncharacterized protein
STRINGPavir.Hb00003.1.p8e-63(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.15e-24C2H2 family protein