PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00127.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 167aa    MW: 18891.5 Da    PI: 6.659
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00127.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.8e-15243548
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
   Pahal.H00127.3  2 SPHEECLIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43
                     899***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001679.05E-12143No hitNo description
SMARTSM007179.2E-11145IPR001005SANT/Myb domain
PROSITE profilePS5129422.586147IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-19244IPR009057Homeodomain-like
PfamPF002492.3E-13242IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-12248IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MSPHEECLII ELHARWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KMSISPSSSS  60
SSVTYQSCLL DTCPIIGMGA ADTHNGSSCV TSTLESTQSA MDAYPIDQIW REIEEPQAPA  120
FLGIAEGKEK TCSSIHCPLP SPAMWDYKFP EIFWKMADEE IRMLAP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6524631e-150EU652463.1 Saccharum officinarum MYB protein (MYBAS1) mRNA, complete cds, alternatively spliced.
GenBankEU6702361e-150EU670236.1 Saccharum officinarum MYB transcription factor MYBAS1 (MYBAS1) mRNA, complete cds, alternatively spliced.
GenBankHM1367801e-150HM136780.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 1 (MYBAS1) mRNA, complete cds, alternatively spliced.
GenBankHM1367811e-150HM136781.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 2 (MYBAS1) mRNA, complete cds.
GenBankHM1367821e-150HM136782.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 3 (MYBAS1) mRNA, complete cds, alternatively spliced.
GenBankKM3874101e-150KM387410.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 1 mRNA, complete cds, alternatively spliced.
GenBankKM3874111e-150KM387411.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 2 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827459.11e-121myb-related protein MYBAS1-like
SwissprotQ53NK64e-77MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A2S3IFT71e-119A0A2S3IFT7_9POAL; Uncharacterized protein
TrEMBLA0A2S3IFU01e-120A0A2S3IFU0_9POAL; Uncharacterized protein
STRINGPavir.Hb00058.1.p1e-102(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.13e-31myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]