PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00144.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 210aa    MW: 22900 Da    PI: 10.0672
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00144.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.16e-153685355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + GVr ++ +g ++AeIrd + +g  +r++lg+f+t+e Aa a+++a+ + +g
  Pahal.H00144.1 36 FIGVRPRP-WGTFAAEIRDSTRRG--ARVWLGTFDTPEAAALAYDQAAFSARG 85
                    57***999.**********43343..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.6533593IPR001471AP2/ERF domain
SMARTSM003803.9E-273599IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-263694IPR001471AP2/ERF domain
PfamPF008471.6E-103685IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-193695IPR016177DNA-binding domain
CDDcd000181.30E-113670No hitNo description
PRINTSPR003672.6E-73647IPR001471AP2/ERF domain
PRINTSPR003672.6E-75975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MAVEGMVWCP NNTWDRQLRQ PDDDASPGEK ERPHAFIGVR PRPWGTFAAE IRDSTRRGAR  60
VWLGTFDTPE AAALAYDQAA FSARGAAAIL NFPVERVRES LGPLALTGGA GGSPVLALKR  120
RHSKRRHRQR KKLSRSVVTT TTSKDLISKQ QRQPPRHCSD VPSLSSGVVA MAVPQHHAVT  180
VRCGVLELED LGTDYLDELL RASCELTAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2336951574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826606.11e-153ethylene-responsive transcription factor ERF094-like
TrEMBLA0A2S3IFS91e-151A0A2S3IFS9_9POAL; Uncharacterized protein
STRINGPavir.Ha00307.1.p8e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-29ethylene response factor 1