PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00145.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 334aa    MW: 36535.6 Da    PI: 6.7199
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00145.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.8e-185097148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed+ l+++++++G g+W++ ar  g++Rt+k+c++rw++yl
   Pahal.H00145.1 50 RGPWTVDEDLTLINYIAEHGEGRWNALARAAGLNRTGKSCRLRWLNYL 97
                     89********************************************97 PP
2Myb_DNA-binding53.17.4e-17103146146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
   Pahal.H00145.1 103 RGDFTADEQLLILDLHSRWGNR-WSKIASHLP-GRTDNEIKNYWRT 146
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.08945101IPR017930Myb domain
SuperFamilySSF466893.74E-3148144IPR009057Homeodomain-like
SMARTSM007179.3E-164999IPR001005SANT/Myb domain
PfamPF002495.4E-175097IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2251104IPR009057Homeodomain-like
CDDcd001678.51E-125297No hitNo description
PROSITE profilePS5129418.814102152IPR017930Myb domain
SMARTSM007171.9E-15102150IPR001005SANT/Myb domain
PfamPF002492.0E-15103146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-24105151IPR009057Homeodomain-like
CDDcd001671.58E-11106146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEMVLQQRAA GGGCRLGPRP AASTAPSAKH EQEQEEVKEA AAGPDAELRR GPWTVDEDLT  60
LINYIAEHGE GRWNALARAA GLNRTGKSCR LRWLNYLRPD VKRGDFTADE QLLILDLHSR  120
WGNRWSKIAS HLPGRTDNEI KNYWRTRVQK HAKQLNCDVN SARFKDAMRF LWMPRLAERA  180
AAAQSSSSPA SPAAYLRQQA ISGDGHGLGG SALMTMTNGA DRSPSSVVTT TSSPCSSRTS  240
SGSTATVNND DYYKAAAPAG GDDWAAIQRD QEFWSTASNL QQLAAGGDDQ QLLFPLADLP  300
MMQDLSGWVQ GFSEGAAPET HQLWSLDDIW RMH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-254514422120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284141e-163KJ728414.1 Zea mays clone pUT6719 MYB transcription factor (MYB4) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827780.10.0transcription factor JAMYB-like
SwissprotQ2QZJ81e-102JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A2S3IFS20.0A0A2S3IFS2_9POAL; Uncharacterized protein
STRINGPavir.Ha00303.1.p1e-145(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.11e-77myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]