PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H00511.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YC

Protein Properties

Length: 256aa MW: 27887.9 Da PI: 5.096

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H00511.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	60.7	3.1e-19	7	86	19	98
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P arikki++adedv +i+ +Pvl+s+a elf+ +l r++ + ++ +tl+ ++++v+r fdfl+++v + Pahal.H00511.1 7 TRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVKRYSSFDFLTEVVNK 86 579************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.7E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	3.1E-20	4	107	IPR009072	Histone-fold
Pfam	PF00808	5.9E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRALE LFLQDLIDRT YEITLQSGAK 60 TLNSFHLKQC VKRYSSFDFL TEVVNKVPDL GGADSCGDER GLPRRRKSNG SDPENDESRS 120 SKMAIRSANI SPRGRGRGRG RGRGRPPTKR KEVGYVQFED ESSMFAEQGE PLPGDETVPE 180 SNHSNENITQ SAQPPVEAPP PAAAPGASKV EEANTDHQSD WPMPDATIAN IGVGPSGFGH 240 LTVQVDEDED YDNED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	3e-23	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	106	PRRRK
2	134	143	RGRGRGRGRG
3	134	144	RGRGRGRGRGR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828176.1	0.0	dr1-associated corepressor-like isoform X1
TrEMBL	A0A2T7CP62	0.0	A0A2T7CP62_9POAL; Uncharacterized protein
TrEMBL	A0A2T8I9I1	0.0	A0A2T8I9I1_9POAL; Uncharacterized protein
STRING	Pavir.Ea01995.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	6e-52	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Pahal.H00511.1