PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00624.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 99aa    MW: 10550 Da    PI: 6.528
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00624.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.94.8e-0530592154
                    HHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH 21 eeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    ++Lr llP+ a        s a++L ++v YI+ L
  Pahal.H00624.1 30 SRLRALLPPgA-----STSSTAQVLDETVAYIRRL 59
                    79******955.....678**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-62674IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-52974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MSSRRRSRRS PPAAAAEEQA ATTVADELVS RLRALLPPGA STSSTAQVLD ETVAYIRRLH  60
AEVDGLAERL ARLMPEDHQP YGGAADDAAQ LIIRALLM*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791209.13e-62transcription factor ILI7-like
TrEMBLA0A2S3IF598e-61A0A2S3IF59_9POAL; Uncharacterized protein
TrEMBLA0A2T7CQ468e-61A0A2T7CQ46_9POAL; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3741233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.14e-11bHLH family protein