PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00741.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 459aa    MW: 51133.8 Da    PI: 4.7499
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00741.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS218.92.7e-67934562374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                      +lLl+ Aeav++gd +la+ + ++l el      + +++++ Rla +f ++L++r+++ +s +y   pp+++    +s +++++++ +e+sP++
  Pahal.H00741.1  93 SDLLLTGAEAVEAGDSSLASVVFSKLDELlpvtfENAAASSFDRLAYHFSQGLQSRMSGASSPCY---PPEPE----QSGTMSVHQMIQELSPFV 180
                     689*************************987665566678*******************555555...33333....5677889999******** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     kf+h+taNqaIl+a+ g++ vH+iDf++s+G+QW +L+  La +  g  s+ +T++   + +++++ ++ ++ La+fAe+l++pf+f++l  ++ 
  Pahal.H00741.1 181 KFTHFTANQAILDATTGDTDVHVIDFNLSEGIQWSSLMSDLARQ--GGKSFHLTAIIMDADHNNNTHHTAARCLAEFAESLNLPFQFSFLCIHNK 273
                     ******************************************85..66799*******888888888888889****************988877 PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.......adhnsesFlerflealeyysalfdsleak 274
                     edl  e+++ +++ +++ ++     +l  +s s  +    +L +vk+l+Pk+vv++e+e       ++++++sF+e f+eal++++++f+sl + 
  Pahal.H00741.1 274 EDL--EDFSRNREGSVVFSCDT--TNLCYKSWSKLQ--MLLLGCVKNLQPKLVVIIEEElvrigkeVSLSHASFVEFFFEALHHFTMVFESLVSC 362
                     776..99988888888888877..555544444444..79*****************996554444555666********************777 PP

            GRAS 275 lpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                     +++ +     + vEr ++g++i++ v +  +   e         + l    F p  ls ++ +qa++l+  ++ + + + +e+g l l+Wk+rpL
  Pahal.H00741.1 363 FSTSNnrVCLKLVERDMVGPKIQDFVGQYRSVTLEVAA--P---KDL--ERFVPCGLSARNIAQARMLVGLFN-RSFGITHEKGRLQLCWKSRPL 449
                     655553455678**************988877333333..2...333..34888889999*************.66******************* PP

            GRAS 368 vsvSaWr 374
                     +svS+W+
  Pahal.H00741.1 450 ISVSVWT 456
                     ******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.97866437IPR005202Transcription factor GRAS
PfamPF035149.1E-6593456IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
METMSYPCSP LLSFPIHEES SYSLWSPQLA HHENSPVDPC EFFDTTAIDS SDTHGQNAFD  60
VDVFTHCPER LLCQESGNLA TIQEELMEEN SLSDLLLTGA EAVEAGDSSL ASVVFSKLDE  120
LLPVTFENAA ASSFDRLAYH FSQGLQSRMS GASSPCYPPE PEQSGTMSVH QMIQELSPFV  180
KFTHFTANQA ILDATTGDTD VHVIDFNLSE GIQWSSLMSD LARQGGKSFH LTAIIMDADH  240
NNNTHHTAAR CLAEFAESLN LPFQFSFLCI HNKEDLEDFS RNREGSVVFS CDTTNLCYKS  300
WSKLQMLLLG CVKNLQPKLV VIIEEELVRI GKEVSLSHAS FVEFFFEALH HFTMVFESLV  360
SCFSTSNNRV CLKLVERDMV GPKIQDFVGQ YRSVTLEVAA PKDLERFVPC GLSARNIAQA  420
RMLVGLFNRS FGITHEKGRL QLCWKSRPLI SVSVWTPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-3110045726379Protein SCARECROW
5b3h_D2e-3110045726379Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826871.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2S3ICH50.0A0A2S3ICH5_9POAL; Uncharacterized protein
TrEMBLA0A2T7CK870.0A0A2T7CK87_9POAL; Uncharacterized protein
STRINGPavir.Ha01828.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-40GRAS family protein