PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H00779.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 266aa MW: 30070.3 Da PI: 7.1851

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H00779.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	91.6	5.8e-29	34	135	1	96
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.. 87 f+k ltpsdv+k++rlv+pk++ae++ + e++ l++ede g+ W+++++y+ +s++yvltkGW+++ k+++L++gD+v F++++ Pahal.H00779.1 34 FEKPLTPSDVGKLNRLVIPKQHAERYfplsseS--GEKGLILSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYIKEKQLDAGDVVHFERMRGfg 126 99************************99542..457789**********************************************774334 PP SEE..EEEE CS B3 88 sefelvvkv 96 + +l+++ Pahal.H00779.1 127 MADRLFIGY 135 555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-40	29	147	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.41E-28	31	125	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.47E-27	32	124	No hit	No description
SMART	SM01019	1.0E-20	34	139	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.422	34	139	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.5E-26	34	137	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MNHLSQEHPQ AWPWGVAMYT NLHYHHYYEK EHLFEKPLTP SDVGKLNRLV IPKQHAERYF 60 PLSSESGEKG LILSFEDEAG KPWRFRYSYW TSSQSYVLTK GWSRYIKEKQ LDAGDVVHFE 120 RMRGFGMADR LFIGYRRRGE SATGAAASPP TVCVAAPAQS AGGEQQPWSP MCYSTSGSYP 180 TSPANSHAYR HSVDYDHSNM QHAGESQWDR DNRSCSAASA PPRRLRLFGV NLDCGPEPEP 240 EPETPTTMYS YMHQSPYAPS TWGSP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-52	29	138	3	113	B3 domain-containing transcription factor NGA1
5os9_B	2e-52	29	138	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035540	2e-37	BT035540.2 Zea mays full-length cDNA clone ZM_BFb0068L13 mRNA, complete cds.
GenBank	EU963065	2e-37	EU963065.1 Zea mays clone 257076 B3 DNA binding domain containing protein mRNA, complete cds.
GenBank	JX469967	2e-37	JX469967.1 Zea mays subsp. mays clone UT3229 ABI3VP1-type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827830.1	0.0	B3 domain-containing protein Os11g0156000-like isoform X2
Swissprot	Q53QI0	1e-125	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	A0A2S3ICJ8	0.0	A0A2S3ICJ8_9POAL; Uncharacterized protein
STRING	Pavir.Ha01761.1.p	1e-169	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06250.2	2e-57	B3 family protein

Link Out ? help Back to Top
Phytozome	Pahal.H00779.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]