PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H00802.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 478aa MW: 52343.5 Da PI: 6.643

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H00802.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.9	6.8e-11	173	202	5	34
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeek 34 k rr+++NReAAr+sR+RKka+i++Le Pahal.H00802.1 173 KTIRRLAQNREAARKSRLRKKAYIQQLESS 202 6789***********************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.5E-7	169	214	No hit	No description
SMART	SM00338	7.9E-7	169	244	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.956	171	215	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.38E-7	173	208	No hit	No description
Pfam	PF00170	4.4E-8	173	206	IPR004827	Basic-leucine zipper domain
CDD	cd14708	8.15E-21	173	225	No hit	No description
PROSITE pattern	PS00036	0	176	191	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.7E-29	253	326	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MGETSSSSHS RQDPCALGYG FHGAIANSTP NFFDQEGATY FGELEEAFMH QVASLRRTQA 60 ATTSTAHHGD ATPFSTAIAA TATARPPPTL DIFPAWPMRS LHTPKKGSNL TADSTEDSES 120 SSKNNSNHSS DQHGATENMA SQFDQGSQQL QEIQQKNMAT SSTTKSGKTL DPKTIRRLAQ 180 NREAARKSRL RKKAYIQQLE SSKLKLAQME QDMQRARSQG LFLGGTPGAN TSSGAAMFDV 240 EYARWLDDHG RRMAELHGAL HAHLPDSDLR AIVDDALTHH DELFQIKAVA AKSDVFHLIT 300 GVWTTPAERC FLWMGGFRPS DLLKTLLPQL DPLTEQQLVG ICNLQQSSQQ AEEALSQGLE 360 QLHQSLADTM AGGSLIDDAN MSIMGQMALA LGKLSNLEGF VIQADNLRQQ TLHQMHRILT 420 VRQAARWFLA IGEYHNRLRA LSSLWASRPR EMLVTDEGNC GEISIAAQPS QSQFSAF*

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MGETSSSSHS RQDPCALGYG FHGAIANSTP NFFDQEGATY FGELEEAFMH QVASLRRTQA  60
ATTSTAHHGD ATPFSTAIAA TATARPPPTL DIFPAWPMRS LHTPKKGSNL TADSTEDSES  120
SSKNNSNHSS DQHGATENMA SQFDQGSQQL QEIQQKNMAT SSTTKSGKTL DPKTIRRLAQ  180
NREAARKSRL RKKAYIQQLE SSKLKLAQME QDMQRARSQG LFLGGTPGAN TSSGAAMFDV  240
EYARWLDDHG RRMAELHGAL HAHLPDSDLR AIVDDALTHH DELFQIKAVA AKSDVFHLIT  300
GVWTTPAERC FLWMGGFRPS DLLKTLLPQL DPLTEQQLVG ICNLQQSSQQ AEEALSQGLE  360
QLHQSLADTM AGGSLIDDAN MSIMGQMALA LGKLSNLEGF VIQADNLRQQ TLHQMHRILT  420
VRQAARWFLA IGEYHNRLRA LSSLWASRPR EMLVTDEGNC GEISIAAQPS QSQFSAF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF111321	0.0	KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828229.1	0.0	transcription factor TGAL4-like isoform X1
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A2S3ICM0	0.0	A0A2S3ICM0_9POAL; Uncharacterized protein
STRING	Pavir.Hb01807.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-136	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.H00802.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]