PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H00839.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 436aa MW: 45941.6 Da PI: 9.0771

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H00839.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.0005	204	227	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C C+++F ++L+ H + H Pahal.H00839.1 204 FPCAGCDEVFGKAESLELHRASrH 227 89*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.704	204	232	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	206	227	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	7.1E-18	229	434	No hit	No description
Gene3D	G3DSA:3.90.228.10	7.0E-9	231	433	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MPCPPMDAAG AAKSQGKKMS RGAAKKTTRS SWMAVGLGFY HSSSSGKNRT QPAQAPAEGK 60 NIDNDKSSSK KKRSISISRS MTCAGSICST KETSVLSRRE DRGGGARSAS SRSLRAPDAA 120 EVADAVYAAS AAAVSATSSF NSEATAAMTS SSSTATSASS PLSSPASSSF GSSFRGVQQI 180 RKLSGCYECH SVFDPRSLGA AAAFPCAGCD EVFGKAESLE LHRASRHAVS ELGPDDTSRN 240 IVEIIFQSSW LRKQAPMCKI DRILKVQNSD RTVWRFEQYK ESIKERASSG EGRKNPRCVA 300 DGNELLRFHC TTLTCSLGAG GGTALCRAPA AQCKLCSIVR DGFRVDGDGK VATMATSGRA 360 HDMAQGLSDG EKKAMLVCRV VAGRVKKTGD RKSSEDSDCD SVSPSSEGVC SDLEELFLFN 420 PRAILPCFVV IYSGY*

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MPCPPMDAAG AAKSQGKKMS RGAAKKTTRS SWMAVGLGFY HSSSSGKNRT QPAQAPAEGK  60
NIDNDKSSSK KKRSISISRS MTCAGSICST KETSVLSRRE DRGGGARSAS SRSLRAPDAA  120
EVADAVYAAS AAAVSATSSF NSEATAAMTS SSSTATSASS PLSSPASSSF GSSFRGVQQI  180
RKLSGCYECH SVFDPRSLGA AAAFPCAGCD EVFGKAESLE LHRASRHAVS ELGPDDTSRN  240
IVEIIFQSSW LRKQAPMCKI DRILKVQNSD RTVWRFEQYK ESIKERASSG EGRKNPRCVA  300
DGNELLRFHC TTLTCSLGAG GGTALCRAPA AQCKLCSIVR DGFRVDGDGK VATMATSGRA  360
HDMAQGLSDG EKKAMLVCRV VAGRVKKTGD RKSSEDSDCD SVSPSSEGVC SDLEELFLFN  420
PRAILPCFVV IYSGY*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828324.1	0.0	uncharacterized protein LOC112903299
TrEMBL	A0A2S3ICP3	0.0	A0A2S3ICP3_9POAL; Uncharacterized protein
STRING	Pavir.Ha00821.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	9e-85	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Pahal.H00839.1