PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00902.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 259aa    MW: 27316.2 Da    PI: 7.6362
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00902.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.62.9e-20121491128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratk..sgyWk.atgkdk 90 
                     lp  ++F+Ptd ++v +yL ++++g +  + ++++ e d +++ Pw+L +++ ++ + + +f  +    +a+g r+ r ++   g W+ ++g++ 
  Pahal.H00902.1  12 LPSACKFDPTDADIVAHYLLPRAAGVPdPPYAHAVIEDDTCSCPPWELLRRHGHGGSdHAFFVGPPGDPAANGGRACRRVRggGGLWRrQKGEES 106
                     57889********************9954555668888**********85554444427788888888899999999966645789*95678888 PP

             NAM  91 evlsk.....kgel....vglkktLvfykgrapkgektdWvmheyrl 128
                     +++++     +  +       +  L++y+  a +++ + Wvmhey++
  Pahal.H00902.1 107 DLVVArggrgG--AelrlRYRRYNLAYYR--AGDPSTSGWVMHEYHI 149
                     88777555541..14555889999****5..555569********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-279165IPR003441NAC domain
PROSITE profilePS5100524.24212166IPR003441NAC domain
PfamPF023655.3E-1314149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEASRFGFDP SLPSACKFDP TDADIVAHYL LPRAAGVPDP PYAHAVIEDD TCSCPPWELL  60
RRHGHGGSDH AFFVGPPGDP AANGGRACRR VRGGGGLWRR QKGEESDLVV ARGGRGGAEL  120
RLRYRRYNLA YYRAGDPSTS GWVMHEYHIL RPKLLPGAVL SRIRITDKGK EERKKQQEAA  180
AAAAKKVAPG PAHQPGRSNY LVDDHAAAVA SDAEGTSSGA QSGVIPQGDD GNGDGGGVGE  240
TTGGYRTNFL SVGEGDGY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827520.10.0NAC domain-containing protein 10-like
TrEMBLA0A2S3ICU60.0A0A2S3ICU6_9POAL; Uncharacterized protein
STRINGSi027836m6e-83(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143011926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-06NAC domain containing protein 25