PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00921.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 296aa    MW: 31931.9 Da    PI: 8.492
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00921.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.51e-1062104255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GVr     g+WvAeIr+p   + r +r +lg+f t    a+a++aa+++l+g
  Pahal.H00921.1  62 PFRGVR----CGKWVAEIREP---N-RgARLWLGTFAT----ARAYDAAARALYG 104
                     689997....79********8...3.35**********....8888888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.14145112IPR001471AP2/ERF domain
SMARTSM003803.6E-2062118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-1763111IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-1163111IPR016177DNA-binding domain
PfamPF008472.3E-469101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDVVVQHQQQ RLLPLPPFHQ QAAALQQHQQ KAGGGGRKCC PLRRSRKGCV KGEGGPENQR  60
CPFRGVRCGK WVAEIREPNR GARLWLGTFA TARAYDAAAR ALYGDCARLN LMPALPQAEA  120
AAAAAANNNM VALKPSPAAS PSSPGHHHQY YNYKQEPVMM AAAMTHSAPC CSADDASPNS  180
NCSNYSNSSS SAATTPTAAT AMQQMMADEL AAVKDLHQQQ AEAEDFEDYV TRLPKAEDFG  240
LGGFQEVPPE VFDEAAGGGI RDHHRRLAVL GHDARLRPAG RPSLIDWTTT RLIRR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1081433e-49AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence.
GenBankAP0046233e-49AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBankAP0054113e-49AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16.
GenBankAP0149643e-49AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3393753e-49AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds.
GenBankCP0126163e-49CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680796.11e-77dehydration-responsive element-binding protein 2C-like
SwissprotQ84ZA17e-58DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA0A2T7CL141e-124A0A2T7CL14_9POAL; Uncharacterized protein
STRINGPavir.J25464.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.13e-17ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]