PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01278.5
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 570aa    MW: 64934.8 Da    PI: 8.7034
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01278.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.2e-08356397347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE e+  + v++ G+  Wk  a  +g  +++ ++k+ w+  
   Pahal.H01278.5 356 KWTQEEYEIVRRFVEKNGTT-WKELATDLG--KSEIHVKDTWRRM 397
                      8*****************99.********8..9*******99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.6E-4280351IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-7282344IPR009057Homeodomain-like
PROSITE profilePS500905.413283349IPR017877Myb-like domain
SuperFamilySSF466892.15E-8329410IPR009057Homeodomain-like
PROSITE profilePS512949.59351402IPR017930Myb domain
SMARTSM007170.05353400IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-9356408IPR009057Homeodomain-like
PfamPF139212.0E-9357415No hitNo description
PROSITE profilePS500908.258399467IPR017877Myb-like domain
SMARTSM007170.0022403469IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-8409452IPR009057Homeodomain-like
SuperFamilySSF466893.83E-8447525IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-6453520IPR009057Homeodomain-like
PROSITE profilePS500907.979469522IPR017877Myb-like domain
SMARTSM0071715473524IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MERGSAAEYS EVKAVIGSNE EKKGQRSKKD KGQRKRKKDK AKGHGGDGDR SIESDDKNHS  60
VEMEHAEVSA KMAEKPCSEH AEVIMSKRDA KKDRKKKKRN KEVDTISQKQ IPDANDGSVG  120
SEYVEMNKGE GEHDSTSKKG KRKHRDGETS SNGSCDQIVS GGDKKRKWKE PSVTLEEGND  180
VDVSKMGQNT EGKKKRRKER DNIAVDLSQN TPAGDGKNCN EEKKTSKDDN DGGKSRKVNM  240
ARRKDKGKRV SFTDDVEVFN IDGDGADEEG DGSGDSGLVH GKRFTPEEDA KLMEAIEKYA  300
QMKQLGEKGL EMIRASMKHP ELRGCWAEIA TSLPHRPQMA VYKRARILLY RSAERKWTQE  360
EYEIVRRFVE KNGTTWKELA TDLGKSEIHV KDTWRRMKPK NLKKGSWTQD EYQNLFDLVN  420
LDLRVKAHQK IAPSHRQLRD NISWEAISEK LTTRSNKDCC LKWYQQLASP LVKEGIWADT  480
DDYLLMEALQ KVDAVCVEDV DWERLLDHRS GELCRQRWNQ MVRMIGGHRE KPFIEQVEVL  540
ARRYCQEMLD YRKAESADLS PDELTGGTD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12935DKGQRKR
23337RKRKK
33338RKRKKD
43339RKRKKDK
59098KKDRKKKKR
69398RKKKKR
7192196KKKRR
8192197KKKRRK
9193197KKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811599.10.0RNA polymerase I termination factor-like isoform X2
RefseqXP_025811600.10.0RNA polymerase I termination factor-like isoform X2
TrEMBLA0A2S3HM590.0A0A2S3HM59_9POAL; Uncharacterized protein
STRINGPavir.Db02194.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.12e-93MYB_related family protein