PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01416.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 153aa    MW: 16668.1 Da    PI: 9.3544
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01416.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.97.8e-1571106134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C+nCg ++  Tp++Rrgp+g +t CnaCGl+++k++
  Pahal.H01416.1  71 CANCGESSeaTPMMRRGPSGYRTFCNACGLMWAKNN 106
                     *********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062033.5E-73870IPR010402CCT domain
SMARTSM004014.0E-765118IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.30265112IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-969112No hitNo description
Gene3DG3DSA:3.30.50.102.1E-1570111IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.92E-1070113No hitNo description
PfamPF003202.6E-1271106IPR000679Zinc finger, GATA-type
PROSITE patternPS0034407198IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
VETILMLLNG YELAPAQSAR PQLTHLVQPI VVPRDFDRTA AVSRYREKRK STLKFDVKAD  60
YSIRREIASS CANCGESSEA TPMMRRGPSG YRTFCNACGL MWAKNNKIRK LTSAACCGGG  120
AVRLHAYLLH TDTSVQPGSR LTGSSSEECH TA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828797.11e-111GATA transcription factor 20-like
TrEMBLA0A3L6Q3U91e-65A0A3L6Q3U9_PANMI; GATA transcription factor 28-like
TrEMBLK3ZLQ71e-66K3ZLQ7_SETIT; Uncharacterized protein
STRINGSi027518m2e-67(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158801213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.24e-20ZIM-LIKE 2