PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01500.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 139aa    MW: 14881.6 Da    PI: 6.7884
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-054264123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F ++  L  H++ H
  Pahal.H01500.1 42 FSCSYCSKKFYTSQALGGHQNAH 64
                    89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-64069No hitNo description
PROSITE profilePS5015711.4684269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MDPSGEGCGG GGDAHTHLDL NLSPRSSLEE DLELELEQRG YFSCSYCSKK FYTSQALGGH  60
QNAHRLERSI AKRSRELAAA RRHAFLAGGD SGEEARRGKG PRISAPTVMA PSSSHMIRAS  120
PEAGEDLTDK IIDLSLKL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828607.11e-77zinc finger protein GIS3-like
TrEMBLA0A2T8I8203e-76A0A2T8I820_9POAL; Uncharacterized protein
STRINGPavir.Ha01090.1.p2e-52(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.19e-17zinc finger protein 2