PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H01581.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 178aa MW: 19177.5 Da PI: 6.7455

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H01581.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	115	4.8e-36	19	119	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk +rr+C++dC+lapyfpa++p+++a v+++FGasnv ++l++lp +er +a++ ++ eA+ r++dPvyG++g++++lq +++ ++ ela Pahal.H01581.1 19 RCAACKNQRRRCSQDCILAPYFPASDPQRYASVQRVFGASNVARMLQDLPIHERGKAADIMAVEAHRRVQDPVYGCAGIVSRLQGEIRAVQCELA 113 6********************************************************************************************** PP DUF260 96 llkeel 101 ++++++ Pahal.H01581.1 114 RTQAQI 119 *99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.65	18	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.5E-36	19	116	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MSTSSNTEAD AGASPGIRRC AACKNQRRRC SQDCILAPYF PASDPQRYAS VQRVFGASNV 60 ARMLQDLPIH ERGKAADIMA VEAHRRVQDP VYGCAGIVSR LQGEIRAVQC ELARTQAQIA 120 VHATAAARAR PAVGTAQLNA PAQAALTQQQ QEQDDALVMQ QDPFQGLDAL LVDDYSVD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-31	20	123	12	115	LOB family transfactor Ramosa2.1
5ly0_B	2e-31	20	123	12	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791709.1	1e-126	LOB domain-containing protein 24-like
Swissprot	Q8LBW3	1e-38	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2T8I2E1	1e-125	A0A2T8I2E1_9POAL; Uncharacterized protein
STRING	Pavir.J05299.1.p	2e-80	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5282	35	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-38	LBD family protein

Link Out ? help Back to Top
Phytozome	Pahal.H01581.1

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]