PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01942.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YC
Protein Properties Length: 233aa    MW: 25250.8 Da    PI: 4.4798
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01942.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC67.62.2e-2131130298
           NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                     l  fw k    ie++ +f+nh++P++ + +i++  +   m+s+e+P +++k  e+f+ elt+r+w+ a++ +r+++  sdi +a+++++ +  l 
  Pahal.H01942.1  31 LDEFWRKVvgdIENTVNFNNHTIPMSSVVQIIREHQGGLMMSSETPPVVTKVLEIFVEELTVRAWMCAKSHDRSSILESDIYEAINSSESYVCLN 125
                     6789*9977779**********************************************************************************9 PP

           NF-YC  94 divpr 98 
                     d+  r
  Pahal.H01942.1 126 DVRQR 130
                     98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.2E-1546115IPR009072Histone-fold
SuperFamilySSF471138.68E-1548131IPR009072Histone-fold
PfamPF008082.0E-753114IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSSGSKGGAG RPQELHGSPP TTLPSLQQQE LDEFWRKVVG DIENTVNFNN HTIPMSSVVQ  60
IIREHQGGLM MSSETPPVVT KVLEIFVEEL TVRAWMCAKS HDRSSILESD IYEAINSSES  120
YVCLNDVRQR AVTNHDQASM SSNAPQLQQE PHFVTATSTL IEGGPTDHPY KSGEEASQIP  180
EDNLAPTTSA QPDEDPNMLT TSSGGTEETK INSTNGGSFN VPPLSHQVHQ VL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450581.18e-57uncharacterized protein LOC8071541
TrEMBLA0A2S3IDE31e-171A0A2S3IDE3_9POAL; Uncharacterized protein
STRINGPavir.J25453.1.p1e-120(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17894510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-18nuclear factor Y, subunit C2