PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H02010.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 218aa    MW: 23453.2 Da    PI: 8.3562
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H02010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-144795354
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    + GVr ++ +g++ AeIrd s++g  +r++lg+f+ +e Aa a+++a+ + +
  Pahal.H02010.1 47 FIGVRKRP-WGKFGAEIRD-STRG-GARVWLGTFDNPEAAAIAYDQAAFASR 95
                    57******.**********.3433.4*********************98755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.2E-2846110IPR001471AP2/ERF domain
PROSITE profilePS5103220.66646104IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1947105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-2647104IPR001471AP2/ERF domain
PfamPF008475.3E-94796IPR001471AP2/ERF domain
PRINTSPR003671.2E-74758IPR001471AP2/ERF domain
CDDcd000185.14E-1547105No hitNo description
PRINTSPR003671.2E-77086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDADECSGWS SSSSSCTSSG TGMESIGTAN GRHWRQDAWP GQKQEAFIGV RKRPWGKFGA  60
EIRDSTRGGA RVWLGTFDNP EAAAIAYDQA AFASRGADAI LNFPIRHVQQ SLHTIVDATA  120
GVSPVLALKR HHSRRMSTAR RRSKLVHGRD TTSTKTNKNR MCQQQLAPQS ATASSVSSVA  180
AMAVPQPVAT PGHCDVLELE DLGAEYLEEL LRMASED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2343106265ATERF1
3gcc_A5e-2343106265ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828667.11e-104dehydration-responsive element-binding protein 3-like
TrEMBLA0A2T8I8H91e-160A0A2T8I8H9_9POAL; Uncharacterized protein
STRINGPavir.Hb01232.1.p2e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06160.15e-28octadecanoid-responsive Arabidopsis AP2/ERF 59