PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H02089.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 258aa    MW: 27921.9 Da    PI: 5.1818
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H02089.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.33e-1697146355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + GVr ++ +g+++AeIrd + +g  +r++lg+f+t+e Aa a+++a+ + +g
  Pahal.H02089.1  97 FIGVRKRP-WGKFAAEIRDSTRRG--ARVWLGTFDTPEAAALAYDHAAYAARG 146
                     57******.**********43343..**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.53596154IPR001471AP2/ERF domain
SMARTSM003802.7E-2896160IPR001471AP2/ERF domain
PfamPF008472.0E-1197146IPR001471AP2/ERF domain
PRINTSPR003671.8E-897108IPR001471AP2/ERF domain
CDDcd000182.70E-1297131No hitNo description
Gene3DG3DSA:3.30.730.102.1E-2797155IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2097156IPR016177DNA-binding domain
PRINTSPR003671.8E-8120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEHVHCTSYS YSYCYPAEAP AATASLPFDT ADGDEMYMQL NALLLQMEAD DESSDSFSSS  60
SPASSSEAGT ASATTSDEQP WRESSSTAEE RWRPEAFIGV RKRPWGKFAA EIRDSTRRGA  120
RVWLGTFDTP EAAALAYDHA AYAARGAAAV LNFPVERVRE SLGALALSVS AGNSPVLALK  180
RRHSKRTRRS KLSAASSSLK TQRQPTTTLH FSGVSVMDVV VPQRHEASPC SYGTVELEDL  240
GADSLEELLR VSSELQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-23971561574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276832e-90KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828658.10.0ethylene-responsive transcription factor ERF094-like
TrEMBLA0A2S3IDX20.0A0A2S3IDX2_9POAL; Uncharacterized protein
STRINGPavir.Hb01145.1.p7e-78(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.17e-23ethylene-responsive element binding factor 15