PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H02277.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 184aa MW: 18819.8 Da PI: 10.9354

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H02277.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.1	5e-11	33	82	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r+a e+Er RR+++ ++eL llP + ++ Ka iLe+A+ Y+ L Pahal.H02277.1 33 QRQAMVEIERARRRHMSRLYAELGALLPDL----PPRAPKARILEEAIAYVGAL 82 699999*********************6....389***********8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.28E-11	31	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-10	31	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.084	32	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.38E-9	32	83	No hit	No description
Pfam	PF00010	2.4E-8	33	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-8	38	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd02116	0.00259	127	178	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MAAEHPLALS LAGGRTKGSP AGTTTVALAP PEQRQAMVEI ERARRRHMSR LYAELGALLP 60 DLPPRAPKAR ILEEAIAYVG ALRGTVAKLE APGAVEGAGR RTAAVAAEVL AAEKASCFAA 120 RLPAARRPGA LTRVLEVFRR YGVPVLAATV TSNAGEAAVT VTTGAVAPSV VEGIKADISR 180 SIA*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818588.1	1e-121	uncharacterized protein LOC112894950
TrEMBL	A0A2S3HVB1	1e-120	A0A2S3HVB1_9POAL; Uncharacterized protein
STRING	Pavir.Eb01569.1.p	1e-99	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9141	19	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	1e-10	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.H02277.1