PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H02316.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRF

Protein Properties

Length: 371aa MW: 40105.7 Da PI: 7.3877

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H02316.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	70.4	2.2e-22	128	172	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 daepgrCrRtDGKkWRCsr++++++k+CErH++r+++rsrk++e+ Pahal.H02316.1 128 DAEPGRCRRTDGKKWRCSRDAVGDQKYCERHIKRNCHRSRKHVES 172 79****************************************996 PP
2	QLQ	57.2	5.2e-20	68	104	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++a n+PvP+ Ll++i++ Pahal.H02316.1 68 GPFTPTQWMELEHQALIYKHFAVNAPVPSSLLLPIRR 104 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	6.4E-12	68	104	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.464	69	104	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	9.3E-14	69	103	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.468	128	172	IPR014977	WRC domain
Pfam	PF08879	2.2E-17	129	171	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
METGRDGFFG AAERASPPPP SCSFLGSAAA TTGSGGAQML SFSSSGAAGL GLSSGASKMQ 60 GVLSRVRGPF TPTQWMELEH QALIYKHFAV NAPVPSSLLL PIRRSINPWS GLGSSSLIWT 120 PFRPGSGDAE PGRCRRTDGK KWRCSRDAVG DQKYCERHIK RNCHRSRKHV ESRKATPTIA 180 EPSLAVSGGP SLHSYAVPWQ QQVKSSAANV TDPFSRESNR KLLEKQNVHS QLSVSTPMDS 240 FDFSTSGSSQ NRDIVALSPV EFQHDHDQAY LVHGVGSSAE NDNDLQESLL LVSRETLDDG 300 PLGEVFKSKS CQSAYTDILT DQWTATHDMH SPTGILQLSN SNTMPVENHI NSNDYLMATM 360 VNAQTVPTFL *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

METGRDGFFG AAERASPPPP SCSFLGSAAA TTGSGGAQML SFSSSGAAGL GLSSGASKMQ  60
GVLSRVRGPF TPTQWMELEH QALIYKHFAV NAPVPSSLLL PIRRSINPWS GLGSSSLIWT  120
PFRPGSGDAE PGRCRRTDGK KWRCSRDAVG DQKYCERHIK RNCHRSRKHV ESRKATPTIA  180
EPSLAVSGGP SLHSYAVPWQ QQVKSSAANV TDPFSRESNR KLLEKQNVHS QLSVSTPMDS  240
FDFSTSGSSQ NRDIVALSPV EFQHDHDQAY LVHGVGSSAE NDNDLQESLL LVSRETLDDG  300
PLGEVFKSKS CQSAYTDILT DQWTATHDMH SPTGILQLSN SNTMPVENHI NSNDYLMATM  360
VNAQTVPTFL *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827128.1	0.0	growth-regulating factor 8-like isoform X1
Swissprot	Q6AWY1	1e-149	GRF8_ORYSJ; Growth-regulating factor 8
TrEMBL	A0A2S3IEP9	0.0	A0A2S3IEP9_9POAL; Uncharacterized protein
STRING	Pavir.Hb00712.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12960	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	2e-43	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Pahal.H02316.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]