PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H02376.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 225aa    MW: 25079.7 Da    PI: 8.8892
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H02376.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-0740103147
                      TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 
                      r+ WT  E+e+lv+a   + ++            W  Ia+ ++       +Rt+kq+k++w+ y
   Pahal.H02376.1  40 RLDWTIAEEEKLVHAWVYHSNDsitgnnqiglsFWGQIAEIFNstaepsCRRTAKQLKDHWNVY 103
                      789**********************************************99***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.27235104IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.1E-536104IPR009057Homeodomain-like
SuperFamilySSF466892.77E-539112IPR009057Homeodomain-like
PfamPF002492.2E-541103IPR001005SANT/Myb domain
CDDcd001670.0083343103No hitNo description
PfamPF143031.4E-6148220IPR029466No apical meristem-associated, C-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
PPPYGPYPPP PHAAPTVPSP VSVESQNEGA GATEPKRPKR LDWTIAEEEK LVHAWVYHSN  60
DSITGNNQIG LSFWGQIAEI FNSTAEPSCR RTAKQLKDHW NVYNREVTLF NGYYIQEERV  120
RQSGADDAMV MEGAMARYEN DPKVTTAFKR HHWWRAVRHE PKWAAKHGPG GGSDVSSKRT  180
RLGVSGEYSS GGTEDTEEDN ETRPIGRDRA KAAKRKEKAK GKES*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670977.18e-91ribonuclease 3
TrEMBLA0A2T8I2M01e-132A0A2T8I2M0_9POAL; Uncharacterized protein
STRINGGRMZM2G369993_P019e-95(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3263337