PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H02382.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 278aa    MW: 30699.7 Da    PI: 8.2022
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H02382.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.72.3e-36171442128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                     ppGf+F+Ptdee+v +yL++++ + +l+  ++i ++d+++++Pw+L     +++ e yfFs+r  k + g++ nra+ +g Wk++gkd +++++ 
  Pahal.H02382.1  17 PPGFKFRPTDEEIVLHYLRPRAVNAPLPS-SFIVDIDVLSHNPWELL---PEGSMEKYFFSQRVLKWPLGNQWNRAAGDGHWKTSGKDVPIFCSr 107
                     9*************************999.89**************4...3567899************************************86 PP

             NAM  96 ..kgel....vglkktLvfykgrapkgektdWvmheyrl 128
                       +       +g kktLvfy+g++  ge+t+Wvm+ey+l
  Pahal.H02382.1 108 vnG--GeplmIGSKKTLVFYHGKSDFGENTEWVMQEYSL 144
                     652..03566***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-4111154IPR003441NAC domain
PROSITE profilePS5100541.79616207IPR003441NAC domain
PfamPF023659.6E-2217144IPR003441NAC domain
SuperFamilySSF1019412.75E-41195207IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAFSQPVVNA ASIPRAPPGF KFRPTDEEIV LHYLRPRAVN APLPSSFIVD IDVLSHNPWE  60
LLPEGSMEKY FFSQRVLKWP LGNQWNRAAG DGHWKTSGKD VPIFCSRVNG GEPLMIGSKK  120
TLVFYHGKSD FGENTEWVMQ EYSLVGAGLT PYRVMRPGGS NNFGESSSAA AAITEKNDNL  180
SEALNNSKVP VLVNPDESWV VCRIYKKKKH MPRVVTQVYN IAEGGQIPFY NFLEQGNSKG  240
IASSNILTDI PLQNAKDDEE GRDRSTNVEA NSRGVGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-291714416140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828726.11e-156uncharacterized protein LOC112903717
TrEMBLA0A2S3IE550.0A0A2S3IE55_9POAL; Uncharacterized protein
STRINGPavir.Hb01386.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.14e-41NAC domain containing protein 47