PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H02447.3

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 383aa MW: 42055.9 Da PI: 6.6364

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H02447.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82.9	4.4e-26	50	118	2	70
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W ++e+l+Li++rrem+ +++++k++k+lWe++s++mr++gf rsp++C++kw+nl k++kk + +++ Pahal.H02447.3 50 WVREETLCLIALRREMDAHFNTSKSNKHLWEAISARMRDQGFDRSPTMCTDKWRNLLKEFKKARSHARH 118 ***************************************************************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.513	42	106	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	7.2E-5	43	108	IPR009057	Homeodomain-like
SMART	SM00717	9.8E-6	46	108	IPR001005	SANT/Myb domain
CDD	cd12203	5.17E-27	48	113	No hit	No description
Pfam	PF13837	2.6E-18	49	141	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MLLSGPPAAP TPPLLLPESS GEDGGHDSSS RAAAAAAATG SAPKRRAETW VREETLCLIA 60 LRREMDAHFN TSKSNKHLWE AISARMRDQG FDRSPTMCTD KWRNLLKEFK KARSHARHNG 120 GGSGAGGNGN AKMAYYKEID DLLKRREKES GSGGCVASGS GAGKSPTSNS KIESYLQFTT 180 DNGFEDANIP FGPVEANGRS ILSIDDRLED IRHPLPLTAA DAVATNGVNP WNWRDTSTNG 240 GDNQGTFGGR VILVKWCDYT KRIGIDGTTE AIKEAIKSAF GLRTRRAFWL EDEDEVVRTL 300 DRDMPIGAYT LHLDDGVTIK LCNANRMQTP EDKTFYTEED FRDFLARRGW TLLREYGGYR 360 NVESLDDLRP GAIYQGMRSL GD*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MLLSGPPAAP TPPLLLPESS GEDGGHDSSS RAAAAAAATG SAPKRRAETW VREETLCLIA  60
LRREMDAHFN TSKSNKHLWE AISARMRDQG FDRSPTMCTD KWRNLLKEFK KARSHARHNG  120
GGSGAGGNGN AKMAYYKEID DLLKRREKES GSGGCVASGS GAGKSPTSNS KIESYLQFTT  180
DNGFEDANIP FGPVEANGRS ILSIDDRLED IRHPLPLTAA DAVATNGVNP WNWRDTSTNG  240
GDNQGTFGGR VILVKWCDYT KRIGIDGTTE AIKEAIKSAF GLRTRRAFWL EDEDEVVRTL  300
DRDMPIGAYT LHLDDGVTIK LCNANRMQTP EDKTFYTEED FRDFLARRGW TLLREYGGYR  360
NVESLDDLRP GAIYQGMRSL GD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	6e-39	44	138	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00640	PBM	Transfer from MDP0000164819	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT055522	0.0	BT055522.1 Zea mays full-length cDNA clone ZM_BFc0047D18 mRNA, complete cds.
GenBank	KJ727951	0.0	KJ727951.1 Zea mays clone pUT6049 trihelix transcription factor (THX25) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794723.1	0.0	trihelix transcription factor GT-1-like isoform X2
Swissprot	Q9FX53	1e-143	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A2S3IS98	0.0	A0A2S3IS98_9POAL; Uncharacterized protein
STRING	GRMZM2G047370_P01	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-132	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pahal.H02447.3

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]