PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H02447.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 370aa    MW: 40682.4 Da    PI: 7.5362
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H02447.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.94.1e-2650118270
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                     W ++e+l+Li++rrem+ +++++k++k+lWe++s++mr++gf rsp++C++kw+nl k++kk + +++ 
  Pahal.H02447.4  50 WVREETLCLIALRREMDAHFNTSKSNKHLWEAISARMRDQGFDRSPTMCTDKWRNLLKEFKKARSHARH 118
                     ***************************************************************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.51342106IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.9E-543108IPR009057Homeodomain-like
SMARTSM007179.8E-646108IPR001005SANT/Myb domain
CDDcd122031.28E-2648113No hitNo description
PfamPF138372.4E-1849141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MLLSGPPAAP TPPLLLPESS GEDGGHDSSS RAAAAAAATG SAPKRRAETW VREETLCLIA  60
LRREMDAHFN TSKSNKHLWE AISARMRDQG FDRSPTMCTD KWRNLLKEFK KARSHARHNG  120
GGSGAGGNGN AKMAYYKEID DLLKRREKES GSGGCVASGS GAGKSPTSNS KIESYLQFTT  180
DNANGRSILS IDDRLEDIRH PLPLTAADAV ATNGVNPWNW RDTSTNGGDN QGTFGGRVIL  240
VKWCDYTKRI GIDGTTEAIK EAIKSAFGLR TRRAFWLEDE DEVVRTLDRD MPIGAYTLHL  300
DDGVTIKLCN ANRMQTPEDK TFYTEEDFRD FLARRGWTLL REYGGYRNVE SLDDLRPGAI  360
YQGMRSLGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A4e-3944138186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00640PBMTransfer from MDP0000164819Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3579060.0EU357906.1 Zea mays GT-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794723.10.0trihelix transcription factor GT-1-like isoform X2
SwissprotQ9FX531e-134TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A2S3IS980.0A0A2S3IS98_9POAL; Uncharacterized protein
STRINGGRMZM2G047370_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-123Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]