PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H02487.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 238aa    MW: 24388.7 Da    PI: 5.6176
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H02487.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-183483255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  Pahal.H02487.1 34 PYKGVRMRS-WGSWVSEIRAP---NQKRRIWLGSYATPEAAARAYDAALLCLKG 83
                    59****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-283492IPR001471AP2/ERF domain
SMARTSM003804.8E-343497IPR001471AP2/ERF domain
PROSITE profilePS5103221.6143491IPR001471AP2/ERF domain
PfamPF008471.2E-113583IPR001471AP2/ERF domain
PRINTSPR003675.3E-83546IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-193592IPR016177DNA-binding domain
CDDcd000181.80E-173590No hitNo description
PRINTSPR003675.3E-85773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVKNTSNGVA TATAFSDDKA RPESGVGGKS AARPYKGVRM RSWGSWVSEI RAPNQKRRIW  60
LGSYATPEAA ARAYDAALLC LKGSGAVLNF PAASSPSSSS SPHHVDTRHS DPASSSGAMS  120
PRSIQRAAAA AAAAFDAGLG ASVEDRCSSS AGATTTTSAS LSVSTLCSAD HVQEHATSSS  180
AAASTGSPAE GDELWTDLDA FASPKFMDLM ASGAAPFSST WEDPEDDGEV MRLWSFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-132591772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276606e-90KJ727660.1 Zea mays clone pUT5587 AP2-EREBP transcription factor (EREB173) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795709.11e-169ethylene-responsive transcription factor ERF014-like
TrEMBLA0A2S3IS651e-168A0A2S3IS65_9POAL; Uncharacterized protein
STRINGPavir.Ia03856.1.p1e-131(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108303040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.16e-23ERF family protein