PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H02536.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 404aa MW: 44646.7 Da PI: 9.2767

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H02536.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.5	2.6e-07	151	212	1	45
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwq 45 r+ WT ++e+lv+a + ++ W Ia+t++ +Rt+kq+k++w Pahal.H02536.1 151 RLDWTIADEEKLVHAWVFHSNNsvtgnnqtgssFWGQIAKTFNsttepsRHRTAKQLKDHWT 212 789**********************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.8E-4	147	213	IPR009057	Homeodomain-like
Pfam	PF14303	1.1E-7	259	381	IPR029466	No apical meristem-associated, C-terminal domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MTGWSPDFHT FTDLLQSDGS QSSPQDDPSP MHRRYDVNSS PQPRALFLPA APPAPGAPPP 60 PYHYPYGLYS YPIPPYAPPP YAPPPGTRSG TEGPYPPPSY APPPYAPPPY APPPYGLYPP 120 PPHAAPMVPS SVSVESQNEG AGTTEPKRPK RLDWTIADEE KLVHAWVFHS NNSVTGNNQT 180 GSSFWGQIAK TFNSTTEPSR HRTAKQLKDH WTVCNREVAL FNGYYIQEER VRQSGADDAM 240 VMEGAMARYE NDPKVTTAFK RHHWWRAVRH EPKWAPKHGL GSGSDVSSKR TRLGVSGEYS 300 SGGTEDTKQD NETRPVGRDK AKAAKRKEKA KGKESSSSSA VGSKAFAMKN TWGGLVKAKL 360 YKQWNIMKSR STADMDEAEK RTHFKAIKMV EKELGLDEDS EED*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MTGWSPDFHT FTDLLQSDGS QSSPQDDPSP MHRRYDVNSS PQPRALFLPA APPAPGAPPP  60
PYHYPYGLYS YPIPPYAPPP YAPPPGTRSG TEGPYPPPSY APPPYAPPPY APPPYGLYPP  120
PPHAAPMVPS SVSVESQNEG AGTTEPKRPK RLDWTIADEE KLVHAWVFHS NNSVTGNNQT  180
GSSFWGQIAK TFNSTTEPSR HRTAKQLKDH WTVCNREVAL FNGYYIQEER VRQSGADDAM  240
VMEGAMARYE NDPKVTTAFK RHHWWRAVRH EPKWAPKHGL GSGSDVSSKR TRLGVSGEYS  300
SGGTEDTKQD NETRPVGRDK AKAAKRKEKA KGKESSSSSA VGSKAFAMKN TWGGLVKAKL  360
YKQWNIMKSR STADMDEAEK RTHFKAIKMV EKELGLDEDS EED*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008662552.1	1e-137	ribonuclease 3
TrEMBL	A0A2T7E0S8	0.0	A0A2T7E0S8_9POAL; Uncharacterized protein
STRING	GRMZM2G169418_P01	1e-137	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3263	3	37

Link Out ? help Back to Top
Phytozome	Pahal.H02536.1