PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H02659.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 351aa MW: 38873.2 Da PI: 9.9271

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H02659.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.7	4.7e-07	135	198	1	47
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 r+ WT E+e+lv+ + ++ W Ia+t++ +Rt kq+k++w+ y Pahal.H02659.1 135 RLDWTIAEEEKLVHTWVYHSNDsitgnnqtglsFWGQIAETFNstaepsRRRTVKQLKDHWNVY 198 789***********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.226	130	199	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.2E-4	131	200	IPR009057	Homeodomain-like
Pfam	PF14303	1.3E-7	243	333	IPR029466	No apical meristem-associated, C-terminal domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MTGWSPDFHT FTDLLQYDKS QASPQDESSP MHRRSDVNSS PQPRALFPPA APPAPGAPPP 60 PYHYPYGPYS YPPPPYAPPP GSRSGTEGPY PPPSYASPPY APPPYAPPPY GPYPPPPHAS 120 QNEGAGATKP KRPKRLDWTI AEEEKLVHTW VYHSNDSITG NNQTGLSFWG QIAETFNSTA 180 EPSRRRTVKQ LKDHWNVYNR EVILFNGYYI QEERVRQSGA DDAMVMEGAM ARYENDPKVT 240 TAFKRHHWWR AVRHEPKWAA KYGSGSGSDV SSKRTRLGVS GEYSSGGTEN TEEDNQTRPI 300 GRDRAKAAKR KEKAKGKEKG KESSSSSAVA SKAFAMKNMW GGLVKAKLFK *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MTGWSPDFHT FTDLLQYDKS QASPQDESSP MHRRSDVNSS PQPRALFPPA APPAPGAPPP  60
PYHYPYGPYS YPPPPYAPPP GSRSGTEGPY PPPSYASPPY APPPYAPPPY GPYPPPPHAS  120
QNEGAGATKP KRPKRLDWTI AEEEKLVHTW VYHSNDSITG NNQTGLSFWG QIAETFNSTA  180
EPSRRRTVKQ LKDHWNVYNR EVILFNGYYI QEERVRQSGA DDAMVMEGAM ARYENDPKVT  240
TAFKRHHWWR AVRHEPKWAA KYGSGSGSDV SSKRTRLGVS GEYSSGGTEN TEEDNQTRPI  300
GRDRAKAAKR KEKAKGKEKG KESSSSSAVA SKAFAMKNMW GGLVKAKLFK *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008670977.1	1e-114	ribonuclease 3
TrEMBL	A0A2S3IRC9	1e-165	A0A2S3IRC9_9POAL; Uncharacterized protein
STRING	GRMZM2G369993_P01	1e-116	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3263	3	37

Link Out ? help Back to Top
Phytozome	Pahal.H02659.1