PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00132.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 213aa    MW: 22105.6 Da    PI: 4.8204
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00132.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-172979156
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    + y+G+r++   g+Wv+eIr+p++   ++r++lg++ ++e+Aa+a++aa+++l+g+
  Pahal.I00132.1 29 PVYRGIRYRG--GKWVSEIREPRK---STRIWLGTYPSPEMAAAAYDAAALALRGA 79
                    68*****975..*********843...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-122978IPR001471AP2/ERF domain
PROSITE profilePS5103219.9683086IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-263086IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-183086IPR016177DNA-binding domain
SMARTSM003801.1E-243092IPR001471AP2/ERF domain
PRINTSPR003672.3E-63142IPR001471AP2/ERF domain
CDDcd000187.91E-143186No hitNo description
PRINTSPR003672.3E-66888IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSGEMEQEQD AAGAPPLPLR RVRADTRHPV YRGIRYRGGK WVSEIREPRK STRIWLGTYP  60
SPEMAAAAYD AAALALRGAE AALNFPGAAA SRPAPASCSP DDIRAAAAAA AAAAAAMAGR  120
RPGECAGHSY LPQAAAAAST SGSEAAGASA SEQRAGERRI VDEDDVFQMP RLLEGMAEGL  180
MMSPPRLSPT ADGAGSLEEE DNDNGMSLWD HS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432325e-81AC243232.2 Panicum virgatum clone PV_ABa011-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797835.11e-144ethylene-responsive transcription factor ERF027-like
SwissprotQ9SJR02e-39ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A2T8I6M91e-143A0A2T8I6M9_9POAL; Uncharacterized protein
STRINGSi039264m1e-100(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-23ERF family protein