PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I00153.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 681aa MW: 75847.4 Da PI: 5.899

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I00153.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.4	5.6e-57	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+ +yLk+k++gk++el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd++v Pahal.I00153.1 6 LPPGFRFHPTDEELIIYYLKRKINGKQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVN 99 79**************************.99**********95334455777********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++ vg+kktLv+y+grap+g++tdWvmheyrl Pahal.I00153.1 100 S-HRRPVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 9.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.385	6	156	IPR003441	NAC domain
Pfam	PF02365	1.1E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI IYYLKRKING KQIELEIIPE VDLYKCEPWD LPEKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS HRRPVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIIEHYGAV HHPIEQPQWM 180 ASSVDRSPTL DLSSDVRGDD FESSSFSFPT EAPMDSMQHG GFGMQMSAGH EDGKWMQFLS 240 EDAFNATNPF FMNPASSNFS CLPSKVDVAL ECARLQHRLS LPPLEVEDFP QDVSLDTKTS 300 ILRSNPNEVD ILQEFLSVAS ASQELINGTS NSFPAEMWPG AGTSSSSSTH YINELSSLVE 360 LGVKAKQEVD NFYHMGCIGT SAGFASKSVH VDEPVRLVEI ADMEEELKEE KKQVENLRGV 420 RLHNNDLGEI VVEGDESNPT ECITQYPISD TADNSGEAGH LTDPTDAGGL DTAPIFSQSQ 480 PDDFAIGFDD VNPNTSFDLY EKVDVKHGLF ISRVGAAKTF FHRVEPSKKV SFHLNPLASD 540 VSKAIEKQFH FPISSVTTKV SGRVSIFSKF KALIRDKFLV TKPSSYQRSL LGSKETATVS 600 ELLQIVSLLL TPKEVAGPTT TEQELVKKKA EKPEFGCEGS DHAWLVPLSK RSKGISSMFF 660 SGKWAFLTSA LAIRTPGCNH *

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI IYYLKRKING KQIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS HRRPVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIIEHYGAV HHPIEQPQWM  180
ASSVDRSPTL DLSSDVRGDD FESSSFSFPT EAPMDSMQHG GFGMQMSAGH EDGKWMQFLS  240
EDAFNATNPF FMNPASSNFS CLPSKVDVAL ECARLQHRLS LPPLEVEDFP QDVSLDTKTS  300
ILRSNPNEVD ILQEFLSVAS ASQELINGTS NSFPAEMWPG AGTSSSSSTH YINELSSLVE  360
LGVKAKQEVD NFYHMGCIGT SAGFASKSVH VDEPVRLVEI ADMEEELKEE KKQVENLRGV  420
RLHNNDLGEI VVEGDESNPT ECITQYPISD TADNSGEAGH LTDPTDAGGL DTAPIFSQSQ  480
PDDFAIGFDD VNPNTSFDLY EKVDVKHGLF ISRVGAAKTF FHRVEPSKKV SFHLNPLASD  540
VSKAIEKQFH FPISSVTTKV SGRVSIFSKF KALIRDKFLV TKPSSYQRSL LGSKETATVS  600
ELLQIVSLLL TPKEVAGPTT TEQELVKKKA EKPEFGCEGS DHAWLVPLSK RSKGISSMFF  660
SGKWAFLTSA LAIRTPGCNH *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	1	162	15	174	NAC domain-containing protein 19
3swm_B	2e-55	1	162	15	174	NAC domain-containing protein 19
3swm_C	2e-55	1	162	15	174	NAC domain-containing protein 19
3swm_D	2e-55	1	162	15	174	NAC domain-containing protein 19
3swp_A	2e-55	1	162	15	174	NAC domain-containing protein 19
3swp_B	2e-55	1	162	15	174	NAC domain-containing protein 19
3swp_C	2e-55	1	162	15	174	NAC domain-containing protein 19
3swp_D	2e-55	1	162	15	174	NAC domain-containing protein 19
4dul_A	2e-55	1	162	12	171	NAC domain-containing protein 19
4dul_B	2e-55	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793498.1	0.0	uncharacterized protein LOC112874412 isoform X1
Refseq	XP_025793499.1	0.0	uncharacterized protein LOC112874412 isoform X1
Refseq	XP_025793500.1	0.0	uncharacterized protein LOC112874412 isoform X1
Refseq	XP_025793501.1	0.0	uncharacterized protein LOC112874412 isoform X1
Refseq	XP_025793502.1	0.0	uncharacterized protein LOC112874412 isoform X1
Refseq	XP_025793504.1	0.0	uncharacterized protein LOC112874412 isoform X1
Refseq	XP_025793505.1	0.0	uncharacterized protein LOC112874412 isoform X1
TrEMBL	A0A2S3IV86	0.0	A0A2S3IV86_9POAL; Uncharacterized protein
TrEMBL	A0A2T7CIH8	0.0	A0A2T7CIH8_9POAL; Uncharacterized protein
STRING	Pavir.Ia04558.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6624	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-128	NAC domain containing protein 28

Link Out ? help Back to Top
Phytozome	Pahal.I00153.1