PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I00164.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 305aa MW: 33440.6 Da PI: 9.8014

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I00164.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.2	1.2e-31	31	135	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 f+kv tpsdv+k++rlv+pk++ae++ +e++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + g+ + Pahal.I00164.1 31 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvGEaAR 125 89*************************955556888*********************************************66588899 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l++ ++r+ Pahal.I00164.1 126 GRLFIDWRRR 135 99*99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.5E-41	22	138	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.89E-29	28	135	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.02E-26	29	116	No hit	No description
SMART	SM01019	3.0E-21	31	136	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.367	31	136	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-28	31	135	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009908	Biological Process	flower development
GO:0048366	Biological Process	leaf development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MEFTAGPTRS GGGGGEERAE QAAAVEKEHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLD 60 AAANEKGLLL SFEDRTGKPW RFRYSYWNSS QSYVMTKGWS RFVKEKRLDA GDTVSFGRGV 120 GEAARGRLFI DWRRRPDPPL QYHRLPLPSI PYAPWAHAQY PAALGARTTV LHLPPSPSSL 180 YDYDSHRRHV GYDAYGAGSR QLLFYRPHHQ QHPQATTMVL DSVPVRIPTT PGQHAEPPPP 240 VASSASKRVR LFGVNLDCAG SEEESGGGRT APPTTQTLPL QLPSPPSSSS SSSGKARCSL 300 NLDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	4e-64	26	136	3	114	B3 domain-containing transcription factor NGA1
5os9_B	4e-64	26	136	3	114	B3 domain-containing transcription factor NGA1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727001	1e-162	KJ727001.1 Zea mays clone pUT3977 ABI3VP1 transcription factor (ABI8) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798126.1	0.0	B3 domain-containing protein Os03g0120900-like
Swissprot	Q8LMR9	1e-118	Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBL	A0A2S3IUV8	0.0	A0A2S3IUV8_9POAL; Uncharacterized protein
STRING	Si036864m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	3e-65	B3 family protein

Link Out ? help Back to Top
Phytozome	Pahal.I00164.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]