PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00392.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 226aa    MW: 23528.5 Da    PI: 8.5217
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00392.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.3e-18128161134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C + +Tp+WR+gp g++tLCnaCG+++++ +
  Pahal.I00392.1 128 CTHCASEETPQWRQGPAGPSTLCNACGVRFKSGR 161
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-15122172IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-14124185No hitNo description
Gene3DG3DSA:3.30.50.103.6E-14126159IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.793126158IPR000679Zinc finger, GATA-type
CDDcd002021.51E-14127176No hitNo description
PROSITE patternPS003440128153IPR000679Zinc finger, GATA-type
PfamPF003204.2E-16128161IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAGLEAAEEN PAAAADEHAG GADASLNAFF DHAGLELAAG GGGQGAEEEE ELEWLSNMDA  60
FPSVETMAAE VEAAPSRPSA GLGCLGALPH VVGPRTKGLR RRRRVTAPWS LPPVLPPAPP  120
PAGVRRRCTH CASEETPQWR QGPAGPSTLC NACGVRFKSG RLFPEYRPIG SPTFSPLLHS  180
NSHRRVLEMR RHVEEEAAAG GGRAGARARR AKRAAARAAT AAPGK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0184181e-119BT018418.1 Zea mays clone EL01N0356F04.d mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795993.11e-157GATA transcription factor 3-like
TrEMBLA0A2S3IU961e-156A0A2S3IU96_9POAL; Uncharacterized protein
STRINGPavir.J23680.1.p5e-83(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59623656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.26e-35GATA transcription factor 11