PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00587.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 281aa    MW: 30558.2 Da    PI: 6.8655
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00587.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.2e-1861114356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  Pahal.I00587.2  61 KKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 114
                     4568999**********************************************9 PP
2HD-ZIP_I/II128.42.9e-4160150191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     ekkrrl+ eqv++LE++Fe  +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k++n++L +++++L++e+
  Pahal.I00587.2  60 EKKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKADNDALLSHNKKLQAEI 150
                     69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-1937117IPR009057Homeodomain-like
SuperFamilySSF466891.54E-1952118IPR009057Homeodomain-like
PROSITE profilePS5007117.34656116IPR001356Homeobox domain
SMARTSM003891.3E-1759120IPR001356Homeobox domain
PfamPF000462.4E-1561114IPR001356Homeobox domain
CDDcd000863.87E-1661117No hitNo description
PRINTSPR000311.2E-58796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000311.2E-596112IPR000047Helix-turn-helix motif
PfamPF021834.8E-14116156IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MPLPPRLSRK LIHTARMDAG MAPMLGKRPM YGAEAGGGDE ANGGGGNEDE LSDDGSQAGE  60
KKRRLNVEQV RTLEKNFELG NKLEPERKLQ LARALGLQPR QVAIWFQNRR ARWKTKQLEK  120
DYDALKRQLD AVKADNDALL SHNKKLQAEI LALKGREAGS ELINLNKETE ASCSNRSENS  180
SEINLDISRT PPSEGPDPPP SHHQHPGGGG GGMIPFYPSV GGRPAGVDMD QLLHSTSGPK  240
LEQHGNGGVQ APETASFGNL LCGVDEPPPF WPWADHQHFH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108116RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9664900.0EU966490.1 Zea mays clone 294849 homeobox-leucine zipper protein HAT7 mRNA, complete cds.
GenBankKJ7285060.0KJ728506.1 Zea mays clone pUT6811 HB transcription factor (HB102) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796010.10.0homeobox-leucine zipper protein HOX21-like isoform X2
SwissprotQ8S7W91e-133HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A2S3ITX40.0A0A2S3ITX4_9POAL; Uncharacterized protein
TrEMBLA0A2T7CH060.0A0A2T7CH06_9POAL; Uncharacterized protein
STRINGPavir.Ia04323.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-75HD-ZIP family protein