PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00706.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 326aa    MW: 35207.9 Da    PI: 5.4436
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00706.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24e-18100149255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++G+r+++ +g+W+AeIrdp     + +r++lg+f tae+Aa+a++  +++l+g
  Pahal.I00706.1 100 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFSTAEDAARAYDVEARRLRG 149
                     69*******.**********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.1E-3299157IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-21100158IPR016177DNA-binding domain
PROSITE profilePS5103223.446100157IPR001471AP2/ERF domain
CDDcd000187.70E-29100159No hitNo description
SMARTSM003809.1E-36100163IPR001471AP2/ERF domain
PfamPF008479.6E-11100149IPR001471AP2/ERF domain
PRINTSPR003673.1E-11101112IPR001471AP2/ERF domain
PRINTSPR003673.1E-11123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MCGGAILAEL IPSPRRAASK PVTAGHLWPA GSDSKKAGSG RNKRLQLADV DDFEAAFEDF  60
ADDFDEEEVE DHHFMFSSKS AFSPAHGRSA ASQKKRGRRH FRGIRQRPWG KWAAEIRDPH  120
KGTRVWLGTF STAEDAARAY DVEARRLRGS KAKVNFPAAG ARPRRGNLRA APRLQRHHAA  180
AQPALLAGEN QQEEEIAVKP EIEAAFDVGS FFDMTFPAFP AAPPAMGSSF TGSTGSESGS  240
PAKKLRYDND SSDGMSSGGG SALELADELA YDPFMVLQLP YSGGYESLDG LFAVDAAQDV  300
NGVNSDMNGF NLWSFDEFPN DSDVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2299157463ATERF1
3gcc_A3e-2299157463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19298QKKRGRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0393001e-137BT039300.1 Zea mays full-length cDNA clone ZM_BFc0004M21 mRNA, complete cds.
GenBankEU9702441e-137EU970244.1 Zea mays clone 342610 root abundant factor mRNA, complete cds.
GenBankKJ7269381e-137KJ726938.1 Zea mays clone pUT3484 AP2-EREBP transcription factor (EREB180) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791485.10.0ethylene-responsive transcription factor 1-like
RefseqXP_025791486.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A2S3ITL40.0A0A2S3ITL4_9POAL; Uncharacterized protein
STRINGPavir.Ib00526.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.34e-28ERF family protein