PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00725.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 317aa    MW: 35778.1 Da    PI: 10.5053
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00725.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.85.5e-15216306199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k++++s+v +  +l lp +f+++++ k  ++  +tl de+ ++++ ++    ++++  l++GW +F+  +g+++gD  vF+l++ ++f  +v+
  Pahal.I00725.1 216 FVKAMLHSHVVRGFWLGLPSHFCDTYMPK--QDSIVTLVDEKDEEFDTNY--LAYKKG--LSGGWAGFAICHGMQDGDAAVFQLIKPTTF--KVH 302
                     89************************744..5669***************..555555..9***********************986777..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++r+
  Pahal.I00725.1 303 IIRA 306
                     9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-18207306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-22209306IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-23214305No hitNo description
PROSITE profilePS5086311.166216307IPR003340B3 DNA binding domain
PfamPF023623.0E-13216306IPR003340B3 DNA binding domain
SMARTSM010191.4E-15216307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MPRRPDGHAA SRILPFYPRR LQRSVLVVSF KTRSPPSPPL PLNPPKARGR TAPQSSLLHV  60
RHNWHLIEAE RSRSRVEREM AAVAKQGMSA YEAARERTVL ENKRKMEALN LHHLSAAVKE  120
APKTPSPMKQ KRRRIIEDAV VVPSPPRRSR RLANLPEVKY AEIAPHSADR MTRSPRRPTD  180
LIHLASRGSI SMKARMEAAR KAEELESQLD PEFPSFVKAM LHSHVVRGFW LGLPSHFCDT  240
YMPKQDSIVT LVDEKDEEFD TNYLAYKKGL SGGWAGFAIC HGMQDGDAAV FQLIKPTTFK  300
VHIIRAASDD HSEEDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130134KRRRI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0873000.0BT087300.1 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797698.11e-175B3 domain-containing protein Os03g0184500-like
SwissprotQ10QS91e-139Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLA0A2S3IUR61e-174A0A2S3IUR6_9POAL; Uncharacterized protein
STRINGSi037266m1e-159(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-45B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]