PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00806.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 537aa    MW: 59611.3 Da    PI: 6.6683
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00806.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.59.4e-1271655351373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++++++c +av++ ++   +al+++l++++s +g+pmqRl ay++e+L arl+ +++ lyk+l+++e    +sse +++++l+++++P++kf++
  Pahal.I00806.1 165 LRQVIIACGKAVDE-NACYMDALMSELRQMVSVSGEPMQRLGAYMLEGLIARLSFTGHALYKSLKCKEPV-ATSSELMSYMHLLYDICPFFKFGY 257
                     68999*******98.88999************************************************97.789999****************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI +av+ge+ +HiiDf+i qG QW++++qaLasRp+  p lRiTg+++++s   +   l  +g+rL+++A+++g+pfefn+ v  + ++
  Pahal.I00806.1 258 MSANGAIADAVKGENFIHIIDFQIAQGSQWMTMIQALASRPGRRPYLRITGIDDSNSAhaRGGGLDIVGQRLHSIAQKCGLPFEFNP-VPAASHE 351
                     ******************************************************8888889999***********************.7999999 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     + +e+L v+pgEa++Vn+++qlh+++desv +e++rd++L++vkslsP+vv++veqea++n+++F+ r le+l+yy+a+f+++++  pr++++ri
  Pahal.I00806.1 352 VMYEHLCVRPGEAIVVNFAYQLHHTPDESVGIENHRDRILRMVKSLSPRVVTLVEQEANTNTAPFFLRYLETLDYYTAMFEAIDVARPRDDKKRI 446
                     9********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + E+++++r+ivn++acegaer+erhe ++kWr+rl +aGF+p+pls  +++++k+ll  ++s  yr+ee++g l+lgWk+r+Lv+ SaW
  Pahal.I00806.1 447 SAEQHCVARDIVNLIACEGAERIERHEPFGKWRARLAMAGFRPYPLSPVVNSTIKTLLDSYHSC-YRLEEKDGVLYLGWKNRKLVVSSAW 535
                     **************************************************************55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.032139517IPR005202Transcription factor GRAS
PfamPF035143.2E-124165535IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MSTHASNRSY RYPDNTQIPY YNGNLVPVGG NGTYYMPQNH DDGHYISSDD GLQTSNSRAK  60
GFQTQYCTLD SSSANCVYPA HSSTSSQSQS GSPLSQQESH SDHAYGSSPS ASCVTQVPSW  120
TLKDLENVML GPDSDIGSPD SSLLSGTALH ENNWRELLGI KTGDLRQVII ACGKAVDENA  180
CYMDALMSEL RQMVSVSGEP MQRLGAYMLE GLIARLSFTG HALYKSLKCK EPVATSSELM  240
SYMHLLYDIC PFFKFGYMSA NGAIADAVKG ENFIHIIDFQ IAQGSQWMTM IQALASRPGR  300
RPYLRITGID DSNSAHARGG GLDIVGQRLH SIAQKCGLPF EFNPVPAASH EVMYEHLCVR  360
PGEAIVVNFA YQLHHTPDES VGIENHRDRI LRMVKSLSPR VVTLVEQEAN TNTAPFFLRY  420
LETLDYYTAM FEAIDVARPR DDKKRISAEQ HCVARDIVNL IACEGAERIE RHEPFGKWRA  480
RLAMAGFRPY PLSPVVNSTI KTLLDSYHSC YRLEEKDGVL YLGWKNRKLV VSSAWC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-621675356374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0672840.0BT067284.1 Zea mays full-length cDNA clone ZM_BFb0379I09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791443.10.0scarecrow-like protein 21
RefseqXP_025791444.10.0scarecrow-like protein 21
RefseqXP_025791446.10.0scarecrow-like protein 21
RefseqXP_025791447.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A2S3ITH50.0A0A2S3ITH5_9POAL; Uncharacterized protein
STRINGSi035089m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]