PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00849.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 575aa    MW: 59626.5 Da    PI: 8.4991
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00849.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-0587109123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  Pahal.I00849.1  87 FVCEICNKGFQRDQNLQLHRRGH 109
                     89*******************88 PP
2zf-C2H213.70.00018163185123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H +t+
  Pahal.I00849.1 163 WKCDKCSKKYAVQSDWKAHVKTC 185
                     58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.64E-786109No hitNo description
Gene3DG3DSA:3.30.160.601.9E-586109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94987109IPR007087Zinc finger, C2H2
SMARTSM003550.01787109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SMARTSM00355210128158IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4151184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.64E-7158183No hitNo description
SMARTSM0035590163183IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MLAAARFVGS GRVRCDPLGH GPFCGSEDSG MEVEATPTTA VSASGGAAQL PPPGPPAKKK  60
RALPGMPDPD AEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSG  120
KEARKRVYVC PEPSCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA  180
HVKTCGSREY RCDCGTLFSR RDSFITHRAF CDALAEESAK ARAEVPPAEE DGGSAAAVGP  240
PPAAPPTQEA VPASPAPLRQ QPPPPPPAPA PPHRAEQRNE PETNAPEPTQ FAPPLPSPAA  300
AVPVLSHTSV TATNVSASSS SSSVAGTSQS LMGGMFAPSS MAPSPQFPDL GGGVGRPERA  360
LAAKPPSLCL ATDASSSIFS APVTADRQQF APPPPPSPSP HMSATALLQK AAQMGATSST  420
SSFLRGLGLD ASSSSPGSSS SGQQHHHDAM QLSLPETSLQ QWPPRLEQEP APMLSAGLGL  480
GLPYDSTGAP VCLPELMMGQ SSLFGGKPAT LDFLGLGMSP TGASASRGLP VFMQPIGGAV  540
GMAGTGAGAA ETFVGGRGPQ ATPWERNPST SPIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35159220364Zinc finger protein JACKDAW
5b3h_F4e-35159220364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0545020.0BT054502.1 Zea mays full-length cDNA clone ZM_BFc0103M17 mRNA, complete cds.
GenBankBT0546180.0BT054618.1 Zea mays full-length cDNA clone ZM_BFb0032E02 mRNA, complete cds.
GenBankEU9555780.0EU955578.1 Zea mays clone 1537717 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798188.10.0protein indeterminate-domain 2-like isoform X1
SwissprotQ9LVQ71e-144IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A2S3ITA10.0A0A2S3ITA1_9POAL; Uncharacterized protein
STRINGPavir.Ib00651.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.16e-96C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]