PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00857.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 230aa    MW: 25593.7 Da    PI: 7.1486
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00857.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-1858111356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++++eq + Le  F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  Pahal.I00857.1  58 KKRRLSDEQARFLELSFRKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHK 111
                     66789***********************************************99 PP
2HD-ZIP_I/II109.72e-3558149293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrls+eq+++LE sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++++da++ +n++Le+e  +++e+l+e
  Pahal.I00857.1  58 KKRRLSDEQARFLELSFRKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFSKLRASHDAVVIQNCHLETELLRMKERLAE 149
                     9*************************************************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-1753118IPR009057Homeodomain-like
PROSITE profilePS5007116.71453113IPR001356Homeobox domain
SMARTSM003892.1E-1556117IPR001356Homeobox domain
SuperFamilySSF466891.92E-1657122IPR009057Homeodomain-like
PfamPF000461.0E-1558111IPR001356Homeobox domain
CDDcd000865.03E-1558113No hitNo description
PRINTSPR000315.0E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000315.0E-693109IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGCEEDERLL FPSFAFPAES FAEAATPGSG GEQKKARQRR RRKPRPAGDG DGGDEQSKKR  60
RLSDEQARFL ELSFRKERKL ETPRKVQLAA ELGLDAKQVA VWFQNRRARH KSKLMEEEFS  120
KLRASHDAVV IQNCHLETEL LRMKERLAEA EEEKRKLIAA AAAGAGSSSP SSSSFSTVTH  180
HPAALVGQFG VEAEEAADLA YMSEYAYNSY MNMMDLAPGY FGGVYDHFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13844RRRRKPR
24060RRKPRPAGDGDGGDEQSKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0431630.0BT043163.2 Zea mays full-length cDNA clone ZM_BFc0114N11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792589.11e-168homeobox-leucine zipper protein HOX12-like
SwissprotQ10QF26e-94HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12
TrEMBLA0A2S3ITN01e-167A0A2S3ITN0_9POAL; Uncharacterized protein
TrEMBLA0A2T7CG921e-167A0A2T7CG92_9POAL; Uncharacterized protein
STRINGPavir.Ib00656.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.13e-30homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S,Fang J,Xu F,Wang W,Chu C
    Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.
    Plant Cell, 2016. 28(3): p. 680-95
    [PMID:26977084]