PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I00959.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 269aa MW: 30313.4 Da PI: 6.5203

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I00959.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.4	9.3e-17	15	110	1	100
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk+l + + l+lp kfa++ g ++ +l+l e W+v++ + k+g ++l++GWk+F++a++L++g +vF++d+ + l+v Pahal.I00959.1 15 FFKIL--LPGMYEEALRLPAKFARDLGAR--RDLKLRLAGgEMMPLWDVEVFADEKRGDMYLGRGWKKFARAHDLRDGYLLVFRYDD-GAAALTV 104 78888..444555569*****999866..666788887555599*99****************************87.77779 PP EEE-SS CS B3 95 kvfrks 100 +vf++s Pahal.I00959.1 105 TVFDRS 110 ***985 PP
2	B3	43.5	5.7e-14	159	233	12	87
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +++ l +p +f ++hg+ +++++l+ grsW+v+l+ r ++r+ ++ GW +F+ +ngL++gD++ F+++++ Pahal.I00959.1 159 QNQYLNVPVEFQDAHGYARRRQVELR---MGGRSWSVNLKRgkRVLGDRTAFKYGWHQFCVDNGLEVGDTCFFTVIRE 233 6778999******99988876666...478***554444455599*********************8864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.6E-17	13	112	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.619	13	110	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.94E-17	14	112	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	8.7E-15	15	110	IPR003340	B3 DNA binding domain
CDD	cd10017	2.93E-20	15	108	No hit	No description
Pfam	PF02362	5.3E-14	15	109	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.1E-23	142	260	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.67E-15	144	234	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.50E-12	145	234	No hit	No description
SMART	SM01019	0.0089	146	240	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.547	148	263	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.6E-11	159	233	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MEEEMAGLSL GDSEFFKILL PGMYEEALRL PAKFARDLGA RRDLKLRLAG GEMMPLWDVE 60 VFADEKRGDM YLGRGWKKFA RAHDLRDGYL LVFRYDDGAA ALTVTVFDRS TCRKQYVHAG 120 AAGGGKASRG AGAGRLSLAI AEPSHFAVSL RQCNLGTKQN QYLNVPVEFQ DAHGYARRRQ 180 VELRMGGRSW SVNLKRGKRV LGDRTAFKYG WHQFCVDNGL EVGDTCFFTV IREGACVDDD 240 DEEWEDEWED DEHVLKVEVR KKNGMMLT*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796563.1	0.0	B3 domain-containing protein Os03g0212300-like
Refseq	XP_025796564.1	0.0	B3 domain-containing protein Os03g0212300-like
Swissprot	Q10Q26	5e-89	Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBL	A0A2S3IT12	0.0	A0A2S3IT12_9POAL; Uncharacterized protein
STRING	Pavir.Ia04671.1.p	1e-156	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4748	32	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24645.1	2e-16	B3 family protein

Link Out ? help Back to Top
Phytozome	Pahal.I00959.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]