PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00986.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family YABBY
Protein Properties Length: 196aa    MW: 21892.3 Da    PI: 8.7686
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00986.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY57.75.2e-18146146
           YABBY  1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsll 46
                    +d++s+se++Cyv+C++Cnt+lav vP + l+ +vtv+CGhC +l 
  Pahal.I00986.1  1 MDLVSQSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLS 46
                    57899**************************************984 PP
2YABBY93.93.8e-2986147101162
           YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                      s  ++e +pr+p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa 
  Pahal.I00986.1  86 PSPTSTEASPRMPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 147
                     377789999****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.1E-466148IPR006780YABBY protein
SuperFamilySSF470951.57E-890149IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.9E-5102149IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDLVSQSEHL CYVRCTYCNT VLAVGVPCKR LMDTVTVKCG HCNNLSYLSP RPPMVQPLSP  60
TDHPLGPFQC QGPCNDCRRN QPMPLPSPTS TEASPRMPFV VKPPEKKHRL PSAYNRFMRE  120
EIQRIKAAKP DIPHREAFSM AAKNWAKCDP RCSTTVSTAT SNSAPEPRAV PAPQERAKEQ  180
VIESFDIFKQ IERSI*
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4702680.0AB470268.1 Sorghum bicolor SbDL mRNA for DL related protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797474.11e-143protein DROOPING LEAF isoform X2
SwissprotQ76EJ01e-116YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A2S3IT101e-142A0A2S3IT10_9POAL; Uncharacterized protein
TrEMBLA0A2T7CFS61e-142A0A2T7CFS6_9POAL; Uncharacterized protein
STRINGPavir.Ib00755.1.p1e-140(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.14e-52YABBY family protein