PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01016.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 753aa    MW: 83998.1 Da    PI: 4.7301
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01016.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.72.8e-20691981128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                     lp+G++F+P+d +l+  +L+++v + +      +  +++ik+vd      +++P+d+p  v+++ +  yfF++r ++y+++  +n +     Wk+
  Pahal.I01016.1  69 LPRGVEFNPSDGDLL-WHLAAEVGNGQaerhpfI--NNFIKSVDddrgFSYTHPRDIP-GVRQDGHASYFFHRRFESYSNEGDANIS-----WKK 154
                     699************.789999988886664321..33477775566699********.667788899**********998887774.....*** PP

             NAM  86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      g++++++  +g+l g+k+++v+y    +++ +++tdW +h+y++
  Pahal.I01016.1 155 IGTSRSIIL-DGTLQGCKEVFVLYadMMSDKGSQQTDWRLHQYHI 198
                     *********.999***********5434667778*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-2463216IPR003441NAC domain
PROSITE profilePS5100523.25169216IPR003441NAC domain
PfamPF023653.2E-870198IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MATGFSSLIS RHDSGPDPDH CPLAGRGRLT VQPPAPTRAD FSPPLPGRCE ACVATERTDG  60
ASQQSWPGLP RGVEFNPSDG DLLWHLAAEV GNGQAERHPF INNFIKSVDD DRGFSYTHPR  120
DIPGVRQDGH ASYFFHRRFE SYSNEGDANI SWKKIGTSRS IILDGTLQGC KEVFVLYADM  180
MSDKGSQQTD WRLHQYHIRN IVKDEEELVL SKIFFESRDN LCELAEEARV EAEWDVSTPA  240
DSREKCTTCS NPRIYTETDE LDHISLKERY RILLADKNTC TATVSARESS KTSSKRNQEV  300
TAYEEDICSM LQEISSAPPI IESNPMDDSN SSRLLGEDDS GFLSISGPSV CEVGCSHDPV  360
EGNQVGGAAA CGSESSELIV RKQGGLLADV KLEPALEGYE IDPSESPRAN TAHAEGSVPS  420
LGVKDELNEC DLPGLCEKIS FSSRKRRKMK TTSYSNEKTL EEDACTNDEG IAYCSRQRRM  480
KKTATVSIEK ALDEDAPGLL QILLTRGIVV EEIKLYGAEE DNEMIPDSSE SSFEDLENVI  540
ANIFPKRTSL LKLSIARHEK GGKAIYCLSC LISLIEQSRY LQFRDCPVEW GWCRDLQSFI  600
FVFRSHNRIV LERPEYGYAT YFFEVVQSLP IEWQIHRLVI AMKLSGCGRT ALIENRPLLV  660
GEDLTEGEAH VLEEYGWIRN TGLGTMVNYR DRVVHDRWME KSVSDWRAKI GKLLMTGYAE  720
GQSVTIHGPK KVSDLLEATG DAEIDIKLED PF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795332.10.0uncharacterized protein LOC112875626 isoform X1
TrEMBLA0A2S3IST90.0A0A2S3IST9_9POAL; Uncharacterized protein
STRINGPavir.Ib00786.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-39NAC family protein