PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I01092.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YC

Protein Properties

Length: 377aa MW: 40473.3 Da PI: 11.248

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I01092.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	36.8	8.6e-12	260	351	8	99
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +q +a+d+ ++P+ar++++++a++ + s ea l+ ka e+f+ +++ ++ +a + +++++ ++++av + + f+fl d vp+ Pahal.I01092.1 260 DQKATAADMGSCSFPMARVRQLMRAEDATIRASNEAVFLINKASEFFLGKFAEDAYRNALKDRKKSIIYDNLSTAVCSQKGFKFLSDFVPQR 351 56778899999******************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.9E-16	257	350	IPR009072	Histone-fold
Pfam	PF00808	2.1E-11	272	335	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	9.3E-19	273	350	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MAGKKTTPVK PAPPSTQRNG SATPSSKGRP KQASGEASAA SAKARSAPKP RKITKEKLAA 60 AKRKRDKPEP QEGGKRKKQQ ASGDVATPAK KRKKGDRPES KPQKEPKPAK KKQQPGKPEK 120 PATPGKRHQS SGKQEKATTP SKKQPSSGKP EKAATPVKKQ QSPGKPEKPV TPAKKQQSTG 180 KAEKPAPTPK KQQQSPGKAR KSAAPATTPT KKKQAKSEKP TPTKRKRGDD EPQNEARSPK 240 RASADGDAPA STPVKKKRKD QKATAADMGS CSFPMARVRQ LMRAEDATIR ASNEAVFLIN 300 KASEFFLGKF AEDAYRNALK DRKKSIIYDN LSTAVCSQKG FKFLSDFVPQ RVTAEDALKT 360 TAGNKSQADA RLLVLC*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MAGKKTTPVK PAPPSTQRNG SATPSSKGRP KQASGEASAA SAKARSAPKP RKITKEKLAA  60
AKRKRDKPEP QEGGKRKKQQ ASGDVATPAK KRKKGDRPES KPQKEPKPAK KKQQPGKPEK  120
PATPGKRHQS SGKQEKATTP SKKQPSSGKP EKAATPVKKQ QSPGKPEKPV TPAKKQQSTG  180
KAEKPAPTPK KQQQSPGKAR KSAAPATTPT KKKQAKSEKP TPTKRKRGDD EPQNEARSPK  240
RASADGDAPA STPVKKKRKD QKATAADMGS CSFPMARVRQ LMRAEDATIR ASNEAVFLIN  300
KASEFFLGKF AEDAYRNALK DRKKSIIYDN LSTAVCSQKG FKFLSDFVPQ RVTAEDALKT  360
TAGNKSQADA RLLVLC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	94	AKKRKKG
2	89	93	KKRKK
3	210	226	KKKQAKSEKPTPTKRKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792625.1	0.0	muscle M-line assembly protein unc-89-like isoform X1
TrEMBL	A0A2S3IG98	0.0	A0A2S3IG98_9POAL; Uncharacterized protein
STRING	Pavir.Ib04487.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12826	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	5e-23	nuclear factor Y, subunit C10

Link Out ? help Back to Top
Phytozome	Pahal.I01092.1